Pan Also one more thing, per download instructions, ensure you have the resources downloaded: Resources Resources are required to run most of cTAKES. They are available for download from: ctakes-resources-3.1.0.zip. http://sourceforge.net/projects/ctakesresources/files/ctakes-resources-3.1.0.zip/download Please download, unzip and add/merge the contents to the existing resources directory. Follow the User or Developer Install Guide to direct you through the installation process.
--Pei > -----Original Message----- > From: Chen, Pei [mailto:[email protected]] > Sent: Tuesday, November 12, 2013 4:22 PM > To: Pan Teng > Cc: [email protected] > Subject: RE: cTAKES installation problem > > Pan, > That error seems to be caused by something else (it looks like it can't use > the > local hsqldb) not invalid umls license validated by their web service). > > Try removing any logins to the local database in the xml config: > http://svn.apache.org/repos/asf/ctakes/trunk/ctakes-dictionary- > lookup/desc/analysis_engine/DictionaryLookupAnnotatorUMLS.xml > In particular: > <configurationParameterSettings> > <nameValuePair> > <name>DriverClassName</name> > <value> > <string>org.hsqldb.jdbcDriver</string> > </value> > </nameValuePair> > <nameValuePair> > <name>URL</name> > <value> > > <string>jdbc:hsqldb:res:org/apache/ctakes/dictionary/lookup/umls2011ab/u > mls</string> > </value> > </nameValuePair> > <nameValuePair> > <name>Username</name> > <value> > <string>SA</string> > </value> > </nameValuePair> > <nameValuePair> > <name>Password</name> > <value> > <string/> > </value> > </nameValuePair> > </configurationParameterSettings> > > > From: Pan Teng [mailto:[email protected]] > Sent: Tuesday, November 12, 2013 4:12 PM > To: [email protected] > Subject: cTAKES installation problem > > Hi there, > > I was trying to run the user version cTAKES. I couldn't load the > AggregatePlaintextUMLSprocesso r.xml or the > DictionaryLookupAnnotatorUMLS.xml these analysis engines. I added the > UMLS access rights to the <cTAKES_HOME>/bin/runctakesCVD.sh > <cTAKES_HOME>/bin/runctakesCPE.sh > > Here is how the script look like in the runctakesCPE.sh: > > java -Dctakes.umlsuser=[REMOVED] -Dctakes.umlspw=[REMOVED] -cp > $CTAKES_HOME/lib/*:$CTAKES_HOME/desc/:$CTAKES_HOME/resources/ - > Dlog4j.configuration=file:$CTAKES_HOME/config/log4j.xml -Xms512M - > Xmx1024M org.apache.uima.tools.cpm.CpmFrame > > > There used to be a "*" in my password, I thought there might be some issue > when the script is reading this, so I changed my password to end with "_" > which still doesn't work. > > > Here is how the error message look in the log file: > > > Caused by: java.sql.SQLException: File input/output error: > java.io.IOException: Stream closed > > at org.hsqldb.jdbc.Util.sqlException(Unknown Source) > > at org.hsqldb.jdbc.jdbcConnection.<init>(Unknown Source) > > at org.hsqldb.jdbcDriver.getConnection(Unknown Source) > > at org.hsqldb.jdbcDriver.connect(Unknown Source) > > at java.sql.DriverManager.getConnection(DriverManager.java:582) > > at java.sql.DriverManager.getConnection(DriverManager.java:185) > > at > org.apache.ctakes.core.resource.JdbcConnectionResourceImpl.load(JdbcCo > nnectionResourceImpl.java:109) > > ... 51 more > > > Could someone help me with it? > > > Best, > > Pan
