Hello,
Is there a Maven build process that is recommended in place of
the legacy PEAR installer processes?
I've been going through the painstaking process of getting a stand-alone
project to correctly install and deploy when using the PEAR installer to build
the environment to be run alongside a binary cTAKES installation.
I realize Maven has been utilized to replace many of the build functions within
cTAKES, but I'm wondering if the PEAR install approach should still be valid?
The problem I see when installing via 'runPearInstaller.bat' is the following:
org.apache.uima.resource.ResourceInitializationException: The class
org.apache.ctakes.core.resource.FileResourceImpl does not implement
org.apache.uima.resource.SharedResourceObject.
I should not need to change the FileResourceImpl or is there something else
that may be causing this (?).
Secondly, if I just use the installation 'as is' and run a command to kick off
the CPE (see below) I see:
Caused by: org.apache.uima.resource.ResourceInitializationException: The class
edu.mayo.bmi.metakes.ssri.ae.SSRIHitAnnotator is not a valid Analysis
Component. You must specify an Annotator, CAS Consumer, Collection Reader, or
CAS Multiplier. If you are calling ResourceManager.setExtensionClassPath
, this error can also be caused if you have put UIMA framework jar files on the
extension classpath, which is not allowed. (Descriptor:
file:/C:/Temp/apache-ctakes-3.1.1-bin/apache-ctakes-3.1.1/PHONT_SSRI_term_spotter/desc/analysis_engine/PHONT_Hit.xml)
I'm am not utilizing the "ResourceManager.setExtensionClassPath" and the UIMA
framework classes haven't changed as far as I can tell.
java -cp ^
"%UIMA_HOME%/lib/uima-core.jar;^
%UIMA_HOME%/lib/uima-cpe.jar;^
%UIMA_HOME%/lib/uima-tools.jar;^
%UIMA_HOME%/lib/uima-document-annotations.jar;^
%UIMA_HOME%/lib/uima-examples.jar;^
lib/ctakes-chunker-3.1.1.jar;^
lib/ctakes-clinical-pipeline-3.1.1.jar;^
lib/ctakes-context-tokenizer-3.1.1.jar;^
lib/ctakes-core-3.1.1.jar;^
lib/ctakes-dictionary-lookup-3.1.1.jar;^
lib/ctakes-preprocessor-3.1.1.jar;^
lib/ctakes-lvg-3.1.1.jar;^
lib/ctakes-ne-contexts-3.1.1.jar;^
lib/ctakes-pos-tagger-3.1.1.jar;^
lib/ctakes-type-system-3.1.1.jar;^
PHONT_SSRI_term_spotter/bin;^
PHONT_SSRI_term_spotter/target/classes;^
PHONT_SSRI_term_spotter/target/generated-sources/jcasgen;^
PHONT_SSRI_term_spotter/resources;^
lib/log4j-1.2.16.jar;^
lib/jdom-1.0.jar;^
lib/lucene-core-4.0.0.jar;^
lib/opennlp-tools-1.5.2-incubating.jar;^
lib/opennlp-maxent-3.2.0-incubating.jar;^
lib/openaifsm-0.0.1.jar;^
lib/lvg2010dist-0.0.1.jar;^
lib/xercesImpl-2.10.0.jar;^
lib/xml-apis-1.4.01.jar;^
lib/ctakes-chunker-3.1.1-res.jar;^
lib/ctakes-clinical-pipeline-3.1.1-res.jar;^
lib/ctakes-context-tokenizer-3.1.1-res.jar;^
lib/ctakes-core-3.1.1-res.jar;^
lib/ctakes-dictionary-lookup-3.1.1-res.jar;^
lib/ctakes-preprocessor-3.1.1-res.jar;^
lib/ctakes-lvg-3.1.1-res.jar;^
lib/ctakes-ne-contexts-3.1.1-res.jar;^
lib/ctakes-pos-tagger-3.1.1-res.jar" org.apache.uima.tools.cpm.CpmFrame
Thanks,
~Sean
