Hi I have confirmed that the correct resources zip file was uncompressed and deployed to the correct path
java -jar ./lib/ctakes-clinical-pipeline-3.1.0.jar -Dctakes.umlsuser=<hidden> -Dctakes.umlspw=<hidden> -Xms512M -Xmx1024M /opt/cTAKES-3.1.1/data /opt/cTAKES-3.1.1/data_out Failed to load Main-Class manifest attribute from ./lib/ctakes-clinical-pipeline-3.1.0.jar Still resolving to the same error as if it cannot find appropriate dependancies Can this jar (ctakes-clinical-pipeline-3.1.0.jar) not be called and used on its own with file input and output parameters Again this is running on a server where I do wish process 1 file at a time in an automated fashion Best regards, Abraham Tom ____________________________ Abraham Tom -----Original Message----- From: Masanz, James J. [mailto:masanz.ja...@mayo.edu] Sent: Sunday, April 13, 2014 5:32 AM To: 'dev@ctakes.apache.org' Subject: RE: Command line invocation Yes, that's possible. You need more things on your classpath - you can take a look at the classpath within runctakesCVD.bat Or if you are open to using groovy, take a look at the scripts directory within ctakes-core -----Original Message----- From: Abraham Tom [mailto:a...@practicefusion.com] Sent: Saturday, April 12, 2014 10:55 AM To: dev@ctakes.apache.org Subject: Command line invocation I am not a core java developer, I am a Hadoop data guy We are experimenting with using cTakes and we have no Java developers in house I am trying to invoke ClinicalPipelineWithUmls on a server where I installed the developer cTakes. This invocation is done via the following command line java -verbose -cp "/opt/cTAKES-3.1.1/ctakes-clinical-pipeline/target/classes;/home/mapr/.m2/repository/org/cleartk/cleartk-util/0.9.2/cleartk-util-0.9.2.jar" org.apache.ctakes.clinicalpipeline.ClinicalPipelineWithUmls but I am getting a Class not found error I would like to invoke via command line so that I can wrap a shell script around it and automate the processing of various docs. This should be possible shouldn't it? Best regards, Abraham Tom
