Ill play with it tonight or tomorrow night.
JG — Sent from Mailbox for iPhone On Tue, Jul 22, 2014 at 4:27 PM, Chen, Pei <pei.c...@childrens.harvard.edu> wrote: > There is currently no guides on the confluence wiki for cTAKES 3.2.0... > I was thinking of just cloning 3.1.1 > https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+3.1.1 > And just add the YTEX and/or any new changes to it... > Would be grateful for any help here... >> -----Original Message----- >> From: John Green [mailto:john.travis.gr...@gmail.com] >> Sent: Tuesday, July 22, 2014 2:37 PM >> To: dev@ctakes.apache.org >> Subject: Re: [VOTE] Release Apache cTAKES 3.2.0 (rc2) >> >> What exactly needs updated? I have not had the time (unfortunately) to >> help with this project very much because of the steep learning curve on the >> technology. I'm currently on some protected research time working with >> cTakes as of this week and would be happy to help with some grunt work. >> >> JG >> >> >> On Tue, Jul 22, 2014 at 11:39 AM, Bleeker, Troy C. <bleeker.t...@mayo.edu> >> wrote: >> >> > One page at a time. At least there's that. >> > >> > Thanks >> > Troy >> > -----Original Message----- >> > From: Masanz, James J. >> > Sent: Tuesday, July 22, 2014 10:38 AM >> > To: 'dev@ctakes.apache.org' >> > Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2) >> > >> > When I asked Troy that question for 3.1.1, he didn't know of a way, >> > and I don't either, which is why I had the 3.1.1 page mostly just >> > reference the >> > 3.2 documentation. >> > >> > -----Original Message----- >> > From: Chen, Pei [mailto:pei.c...@childrens.harvard.edu] >> > Sent: Tuesday, July 22, 2014 10:00 AM >> > To: dev@ctakes.apache.org >> > Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2) >> > >> > Thanks James. >> > I was planning on closing the vote today. >> > In the meantime, does anyone a quick way to clone/rename the wiki >> > documentation for 3.2? >> > --Pei >> > >> > > -----Original Message----- >> > > From: Masanz, James J. [mailto:masanz.ja...@mayo.edu] >> > > Sent: Monday, July 21, 2014 4:25 PM >> > > To: 'dev@ctakes.apache.org' >> > > Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2) >> > > >> > > Here's the additional I've done >> > > >> > > I ran "mvn test" with 0 Failures and 0 Errors. >> > > Ran the AggregateTemplateFiller.xml and received same output (except >> > > for internal UIMA identifiers) with rc2 as I did with 3.1.1. >> > > >> > > +1 to release >> > > >> > > -----Original Message----- >> > > From: Masanz, James J. >> > > Sent: Wednesday, July 16, 2014 3:59 PM >> > > To: 'dev@ctakes.apache.org' >> > > Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2) >> > > >> > > FYI, so far I have done the following steps: >> > > >> > > downloaded the source archive >> > > compiled it using: maven compile >> > > downloaded the separately available resources set up classpath to >> > > include e.g. jars (from the bin distribution) set ctakes.umlsuser >> > > and ctakes.umlspw env vars run runctakesCVD.bat loaded >> > > AggregatePlaintextUMLSProcessor.xml >> > > ran against some simple text. >> > > verified did not through an exception. >> > > verified some EventMention and EntityMention annotations were >> produced. >> > > >> > > I will do more testing tomorrow. Just giving a status update. >> > > >> > > --James >> > > >> > > -----Original Message----- >> > > From: Miller, Timothy [mailto:timothy.mil...@childrens.harvard.edu] >> > > Sent: Saturday, July 12, 2014 6:24 AM >> > > To: dev@ctakes.apache.org >> > > Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2) >> > > >> > > Agreed on that. >> > > >> > > I downloaded the new resources binary and was able to run my tests >> > > on the - bin version of the RC. >> > > >> > > +1 for making this the release. >> > > >> > > Tim >> > > >> > > >> > > ________________________________________ >> > > From: Masanz, James J. [masanz.ja...@mayo.edu] >> > > Sent: Friday, July 11, 2014 7:27 PM >> > > To: 'dev@ctakes.apache.org' >> > > Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2) >> > > >> > > I agree about keeping the thread open. >> > > >> > > -- James >> > > >> > > -----Original Message----- >> > > From: Chen, Pei [mailto:pei.c...@childrens.harvard.edu] >> > > Sent: Friday, July 11, 2014 4:28 PM >> > > To: dev@ctakes.apache.org >> > > Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2) >> > > >> > > Updated the lvg.properties file within ctakes-resources on >> > > sourceforge >> > [1]. >> > > Since the Apache cTAKES artifacts didn't change, I would like to >> > > keep this VOTE thread open. >> > > >> > > Also renamed it to 3.2.0 (even though they technically do not have >> > > to follow each other, but probably nice to keep it consistent for >> > > users as James >> > > suggested.) [1] >> > > http://sourceforge.net/projects/ctakesresources/files/ctakes-resourc >> > > es >> > > - >> > > 3.2.0.zip/download >> > > >> > > > -----Original Message----- >> > > > From: Masanz, James J. [mailto:masanz.ja...@mayo.edu] >> > > > Sent: Thursday, July 10, 2014 5:53 PM >> > > > To: 'dev@ctakes.apache.org' >> > > > Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2) >> > > > >> > > > Can you also give ctakesresources the number 3.2 or 3.2.0 instead >> > > > of >> > > > 3.1.3 >> > > > >> > > > -----Original Message----- >> > > > From: Chen, Pei [mailto:pei.c...@childrens.harvard.edu] >> > > > Sent: Thursday, July 10, 2014 2:12 PM >> > > > To: dev@ctakes.apache.org >> > > > Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2) >> > > > >> > > > I think this is due to the fact that the default lvg.properties >> > > > also exits in the ctakes-resources project, so if you download and >> > > > replace, it will override the ctakes configured one. >> > > > I think it's a bug, but probably always been there... >> > > > I'll fix up ctakes-resources on sourceforge nethertheless but it >> > > > shouldn't require any changes to the release candidates. >> > > > >> > > > > -----Original Message----- >> > > > > From: Masanz, James J. [mailto:masanz.ja...@mayo.edu] >> > > > > Sent: Thursday, July 10, 2014 11:59 AM >> > > > > To: 'dev@ctakes.apache.org' >> > > > > Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2) >> > > > > >> > > > > Hi Tim, >> > > > > >> > > > > When you say that it didn't seem to affect the run, where you >> > > > > comparing output to last release or just checking if data seemed >> > > > > OK at a >> > > > glance? >> > > > > >> > > > > -----Original Message----- >> > > > > From: Miller, Timothy >> > > > > [mailto:timothy.mil...@childrens.harvard.edu] >> > > > > Sent: Thursday, July 10, 2014 7:29 AM >> > > > > To: dev@ctakes.apache.org >> > > > > Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2) >> > > > > >> > > > > I was able to run the binary without issues this time. >> > > > > I also downloaded the resources from sourceforge and integrated >> > > > > into the bin release and ran with the ctakes dictionary. >> > > > > >> > > > > I did get some weird exceptions thrown that didn't seem to >> > > > > affect the run -- looks like some hardcoded file paths in LVG? >> > > > > (See >> > > > > below) >> > > > > >> > > > > Tim >> > > > > >> > > > > >> > > > > Exception: java.io.FileNotFoundException: >> > > > > >> /export/home/lu/Development/LVG/lvg2008/data/misc/stopWords.data >> > > > > (No such file or directory) >> > > > > ** Error: problem of opening/reading stop words file: >> > > > > >> > > >> '/export/home/lu/Development/LVG/lvg2008/data/misc/stopWords.data'. >> > > > > Exception: java.io.FileNotFoundException: >> > > > > >> > > > >> > > >> /export/home/lu/Development/LVG/lvg2008/data/misc/nonInfoWords.data >> > > > > (No such file or directory) >> > > > > ** Error: problem of opening/reading non-Info words file: >> > > > > >> > > > >> > > >> '/export/home/lu/Development/LVG/lvg2008/data/misc/nonInfoWords.dat >> > > > > a'. >> > > > > Exception: java.io.FileNotFoundException: >> > > > > >> > > > >> > > >> /export/home/lu/Development/LVG/lvg2008/data/misc/conjunctionWord.d >> > > > > ata (No such file or directory) >> > > > > ** Error: problem of opening/reading conjunction words file: >> > > > > >> > > > >> > > >> '/export/home/lu/Development/LVG/lvg2008/data/misc/conjunctionWord. >> > > > > data'. >> > > > > ** ERR: problem of opening/reading diacritics file: >> > > > > >> > > > >> > > >> '/export/home/lu/Development/LVG/lvg2008/data/Unicode/diacriticMap.d >> > > a >> > > > > ta'. >> > > > > Exception: java.io.FileNotFoundException: >> > > > > >> > > > >> > > >> /export/home/lu/Development/LVG/lvg2008/data/Unicode/diacriticMap.da >> > > > > ta (No such file or directory) >> > > > > Exception: java.io.FileNotFoundException: >> > > > > >> > > > >> > > >> /export/home/lu/Development/LVG/lvg2008/data/Unicode/ligatureMap.da >> > > > > ta (No such file or directory) >> > > > > ** Error: problem of opening/reading ligature file: >> > > > > >> > > > >> > > >> '/export/home/lu/Development/LVG/lvg2008/data/Unicode/ligatureMap.da >> > > > > ta'. >> > > > > ** Error: problem of opening/reading symbol synonym file: >> > > > > >> > > > >> > > >> '/export/home/lu/Development/LVG/lvg2008/data/Unicode/synonymMap. >> > > > > data'. >> > > > > Exception: java.io.FileNotFoundException: >> > > > > >> > > > >> > > >> /export/home/lu/Development/LVG/lvg2008/data/Unicode/synonymMap.d >> > > > > ata (No such file or directory) >> > > > > **Error: problem of opening/reading file >> > > > > >> '/export/home/lu/Development/LVG/lvg2008/data/misc/removeS.data'. >> > > > > Exception: java.io.FileNotFoundException: >> > > > > >> /export/home/lu/Development/LVG/lvg2008/data/misc/removeS.data >> > > > (No >> > > > > such file or directory) >> > > > > ** Error: problem of opening/reading Unicode symbol file: >> > > > > >> > > > >> > > >> '/export/home/lu/Development/LVG/lvg2008/data/Unicode/symbolMap.da >> > > > > ta'. >> > > > > Exception: java.io.FileNotFoundException: >> > > > > >> > > > >> > > >> /export/home/lu/Development/LVG/lvg2008/data/Unicode/symbolMap.dat >> > > > > a (No such file or directory) >> > > > > ** Error: problem of opening/reading Unicode file: >> > > > > >> > > > >> > > >> '/export/home/lu/Development/LVG/lvg2008/data/Unicode/unicodeMap.d >> > > > > ata'. >> > > > > Exception: java.io.FileNotFoundException: >> > > > > >> > > > >> > > >> /export/home/lu/Development/LVG/lvg2008/data/Unicode/unicodeMap.da >> > > > > ta (No such file or directory) >> > > > > ** Error: problem of opening/reading nonStripMap file: >> > > > > >> > > > >> > > >> '/export/home/lu/Development/LVG/lvg2008/data/Unicode/nonStripMap.d >> > > > > ata'. >> > > > > Exception: java.io.FileNotFoundException: >> > > > > >> > > > >> > > >> /export/home/lu/Development/LVG/lvg2008/data/Unicode/nonStripMap.d >> > > > > ata (No such file or directory) >> > > > > java.sql.SQLException: File input/output error >> > > > > >> > > > >> > > >> /export/home/lu/Development/LVG/lvg2008/data/HSqlDb/lvg2008.properti >> > > > > es java.io.FileNotFoundException: >> > > > > >> > > > >> > > >> /export/home/lu/Development/LVG/lvg2008/data/HSqlDb/lvg2008.properti >> > > > > es.new (No such file or directory) >> > > > > >> > > > > ________________________________________ >> > > > > From: Masanz, James J. [masanz.ja...@mayo.edu] >> > > > > Sent: Wednesday, July 09, 2014 2:26 PM >> > > > > To: 'dev@ctakes.apache.org' >> > > > > Subject: RE: [VOTE] Release Apache cTAKES 3.2.0 (rc2) >> > > > > >> > > > > So far for rc2, I've >> > > > > >> > > > > Verified MD5 and signatures of .zip archives Verified that >> > > > > source at tag matches source in.zip Imported source from archive >> > > > > into eclipse as maven >> > > > > project(s) and compiled without any Errors. >> > > > > >> > > > > -- James >> > > > > >> > > > > >> > > > > -----Original Message----- >> > > > > From: Pei Chen [mailto:chen...@apache.org] >> > > > > Sent: Tuesday, July 08, 2014 5:11 PM >> > > > > To: dev@ctakes.apache.org >> > > > > Subject: [VOTE] Release Apache cTAKES 3.2.0 (rc2) >> > > > > >> > > > > Hi all, >> > > > > >> > > > > The main difference between rc1 and rc2 is that we removed the >> > > > > lvg-res and assertion-res.jar from the distro. They still need >> > > > > to be >> > > unpacked. >> > > > > >> > > > > This is a call for a vote on releasing the following candidate >> > > > > (rc2) as Apache cTAKES 3.2.0. >> > > > > The major changes include: >> > > > > - New optional YTEX component(s) (Yale Extensions to cTAKES) >> > > > > - New optional improved/faster dictionary lookup >> > > > > (dictionary-lookup-fast) >> > > > > - New optional Temporal component (Time + Event extraction. >> > > > > Relations will be including in a future release.) >> > > > > - Other bug fixes/enhancements from Jira >> > > > > >> > > > > [TODO: Online documentation still needs to be updated on wiki] >> > > > > >> > > > > For more detailed information on the changes/release notes, >> > > > > please >> > visit: >> > > > > https://issues.apache.org/jira/secure/ReleaseNote.jspa?projectId >> > > > > =1 >> > > > > 23 >> > > > > 13 >> > > > > 621 >> > > > > &version=12324066 >> > > > > >> > > > > The release was made using the cTAKES release process documented >> > > here: >> > > > > http://ctakes.apache.org/ctakes-release-guide.html >> > > > > >> > > > > The candidate is available at: >> > > > > http://people.apache.org/~chenpei/RCs/ctakes-3.2.0-rc2/apache-ct >> > > > > ak >> > > > > es >> > > > > - >> > > > > 3.2.0-src.tar.gz >> > > > > /.zip >> > > > > >> > > > > The tag to be voted on: >> > > > > http://svn.apache.org/repos/asf/ctakes/tags/ctakes-3.2.0-rc2 >> > > > > >> > > > > The MD5 checksum of the tarball can be found at: >> > > > > http://people.apache.org/~chenpei/RCs/ctakes-3.2.0-rc2/apache-ct >> > > > > ak >> > > > > es >> > > > > - >> > > > > 3.2.0-src.tar.gz.md5 >> > > > > /.zip.md5 >> > > > > >> > > > > The signature of the tarball can be found at: >> > > > > http://people.apache.org/~chenpei/RCs/ctakes-3.2.0-rc2/apache-ct >> > > > > ak >> > > > > es >> > > > > - >> > > > > 3.2.0-src.tar.gz.asc >> > > > > /.zip.asc >> > > > > >> > > > > Apache cTAKES' KEYS file, containing the PGP keys used to sign >> > > > > the >> > > release: >> > > > > https://dist.apache.org/repos/dist/release/ctakes/KEYS >> > > > > >> > > > > Please vote on releasing these packages as Apache cTAKES 3.2.0. >> > > > > The vote is open for at least the next 72 hours. >> > > > > Only votes from the cTAKES PMC are binding, but folks are >> > > > > welcome to check the release candidate and voice their approval >> > > > > or >> > disapproval. >> > > > > The vote passes if at least three binding +1 votes are cast. >> > > > > >> > > > > [ ] +1 Release the packages as Apache cTAKES 3.2.0 [ ] -1 Do not >> > > > > release the packages because... >> > > > > >> > > > > Also, the convenience binary can be found at: >> > > > > http://people.apache.org/~chenpei/RCs/ctakes-3.2.0-rc2/apache-ct >> > > > > ak >> > > > > es >> > > > > - >> > > > > 3.2.0-bin.tar.gz >> > > > > /.zip >> > > > > >> > > > > Note: It's temporarily on people.a.o because the artifacts were >> > > > > too large for https://dist.apache.org/repos/dist/dev/ctakes >> > > > > (Working with infra on increasing the limit). >> > > > > >> > > > > >> > > > > Thanks! >> >
