Awesome!! It worked!
The only things I had to change (since I'm on Windows) was flipping the slashes when necessary and removing the first slash when specifying the -Dlog4j.configuration=file:/... Thank you so much for putting up with my issues -Clayton On Wed, Jul 30, 2014 at 2:48 PM, vijay garla <vnga...@gmail.com> wrote: > Can you try this: > copy > > https://code.google.com/p/ytex/source/browse/trunk/workspace/examples/fracture/cui/export.template.xml > to CTAKES_HOME\desc\ctakes-ytex\fracture\cui.xml > replace %DB_SCHEMA% with your database schema name (value of db.schema in > your ytex.properties file) > > Then from a command prompt, execute the following commands: > cd CTAKES_HOME > bin\setenv.bat > java -cp %CLASSPATH% > -Dlog4j.configuration=file:/%CTAKES_HOME%/config/log4j.xml -Xmx256m > org.apache.ctakes.ytex.kernel.SparseDataExporterImpl -prop > desc\ctakes-ytex\fracture\cui.xml -type weka > > Tell me if you run into any issues. > > I will add this to the ctakes confluence doc. > > Best, > > VJ > > > On Wed, Jul 30, 2014 at 5:11 PM, Clayton Turner <caturn...@g.cofc.edu> > wrote: > > > Hi, I'm trying to export the data I get from running the pipeline through > > the Collection Processing Engine. > > > > I set up the pipeline where I have a directory where all the XML is > output > > to, but I am having issues at this point. > > > > I've tried using the built in Exporter from the Data Mining section on > this > > page https://cwiki.apache.org/confluence/display/CTAKES/User%27s+Guide > but > > those notes are out of date. Even altering directories to match the files > > still gives me errors about not being able to find the ExporterImpl > class. > > The class version of this file only exists outside of the target > directory > > for the ctakes snapshot and attempting to use it still fails. > > > > I then ventured to here: > > > > > https://code.google.com/p/ytex/source/browse/#svn%2Ftrunk%2Fworkspace%2Fexamples%2Ffracture > > > > The files here match up to the data mining section from the previous > link - > > so I created my export.xml file and changed everything that needed to be > > changed for my example (tried to even run bone fracture), but I cannot > get > > data exported, no matter what I do. > > > > Is there a way to use some new(er) implementation of the > > SparseDataExporterImpl class or is there an alternative for extracting > data > > for use with weka? > > > > I've messaged about this in the past but I don't believe I was thorough > > enough with my issues. > > > > Thanks in advance, > > Clayton > > > -- -- Clayton Turner email: caturn...@g.cofc.edu phone: (843)-424-3784 web: claytonturner.blogspot.com ------------------------------------------------------------------------------------------------- “When scientifically investigating the natural world, the only thing worse than a blind believer is a seeing denier.” - Neil deGrasse Tyson
