[+dev] Yu, Yes, you can run it from the command line in many ways. 1) You can write a Java class that does it for you. Similar to http://svn.apache.org/repos/asf/ctakes/trunk/ctakes-examples/src/main/java/org/apache/ctakes/examples/pipelines/ExampleAggregatePipeline.java
2) Run the CPE (Collection Processing Engine) via command line. I would suggest running it once via the CPE GUI first, then save the configuration to be run via command line. I would suggest using [CollectionReaderHere] [ *AggregatePlaintextFastUMLSProcessor*.xml] [CasConsumerHere] instead of AggregateCdaUMLSProcessor for your CPE configuration. Example of running the CPE from command line: java <copyyourargumentshere> org.apache.uima.examples.cpe.SimpleRunCPE <path_to_your_cpe.xml> On Wed, Jan 21, 2015 at 1:25 PM, Liang, Yu <yu.li...@nyumc.org> wrote: > Dear Pei, > > I have a question about cTakes. Our purpose is to use cTakes to > identified UMLS concepts from our medical notes which are about 4000 notes > in total and all are free-text. > > In order to put cTakes into our final pipeline, we want to find a way to > run the notes and get the output by command line not GUI. Is there any way > we can do that? I am not Java person, it is very hard to me to play around > myself. I am going to use the “AggregateCdaUMLSProcessor” analysis engine > . So if you could give me a clue, really appreciate that. I guess the > command line will contain many parameters, like .jar files to be run, > right? > I am very confused where to find them, and if I find them, how to decide > which to be put in the command line in our case , for example, we use > AggregateCDAUMLSProcessor? > > Thanks again. > Hope to hear from you very soon. > > > > > Yu Liang > > > > > > > >
