Chris, Could you confirm if the paths were modified? if so, is it accurate? In particular, per error message: des -> desc? Malformed URL c:/apache-ctakes-3.2.2/*des*/ctakes-chunker/desc
If not, would you mind including the descriptor xml's? --Pei On Mon, Oct 19, 2015 at 5:38 PM, Tonner, Chris <chris.ton...@ucsf.edu> wrote: > Hello: > > > > I work in the Department of Medicine at the University of California, San > Francisco. We are interested in cTakes to extract medical information from > our EMRs. > > > > I have been attempting to install and run cTakes, but have had some > problems. Would you be able to give us technical help to get cTakes up and > running. > > > > Following the instructions on the User Installation Guide. > https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+3.2+User+Install+Guide > > > > I have modified the two bat files c: bin\runctakesCVD.bat file and > CPE.bat… Example of modified code – is this correct? > > > > @REM set ctakes.umlsuser=[christonner], ctakes.umlspw=[123Start] > > @REM or add the properties > > @REM -Dctakes.umlsuser=[christonner] -Dctakes.umlspw=[123Start] > > > > These batch files run and the debugger opens. > > > > I can load some of the analysis engine, but get errors with the UMLS and > the negation AE. > > > > In short we are at a loss on how to troubleshoot this. Is there a more > extensive manual on how to install cTakes and how to use cTakes? > > > > Error Examples. > > > > SEVERE: Malformed URL > c:/apache-ctakes-3.2.2/des/ctakes-chunker/desc/AdjustNounPhraseToIncludeFollowingPPNP.xml > in import declaration. (Descriptor: > file:/C:/apache-ctakes-3.2.2/desc/ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextFastUMLSProcessor.xml) > > org.apache.uima.resource.ResourceInitializationException: Malformed URL > c:/apache-ctakes-3.2.2/des/ctakes-chunker/desc/AdjustNounPhraseToIncludeFollowingPPNP.xml > in import declaration. > > (Descriptor: > file:/C:/apache-ctakes-3.2.2/desc/ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextFastUMLSProcessor.xml) > > > > Thanks you, > > Chris Tonner > > University of California, San Francisco > > > > > > >
