Hi Dave, If you happen to still have the instructions, I think it would be great to share what you have on the wiki as it seems to be a common request (let me know if you need write access).
—Pei > On Dec 8, 2015, at 12:47 PM, David Kincaid <[email protected]> wrote: > > This seems like a pretty common request and with such an old version of > UMLS database shipped with cTAKES it's only going to get worse. I've been > wanting to build a dictionary using the latest UMLS release (as well as a > custom database), so would be happy to write up the steps as I go through > it. That assumes that I can dig up the instructions in the dev list. > > - Dave > > On Tue, Dec 8, 2015 at 11:36 AM, Finan, Sean < > [email protected]> wrote: > >> Hi Alaa, >> >> The -shortest- answer is that you'll need to run the dictionary creation >> tool. There are instructions in older devlist threads. By default the >> dictionary creation tool does add icd9 and icd10 tables to the dictionary. >> The problem is that in Umls 2011AB those codes weren't very well >> populated. The 2015AB icd# set is much more rich so those tables should be >> pretty good. Then in ctakes you would look up annotations by icd9 or icd10 >> codes instead of by cui: >> OntologyConceptUtil.getAnnotationsByCode( jcas, lookupWindow, icd#Code ); >> OntologyConceptUtil.getAnnotationsByCode( jcas, icd#Code ); >> >> Sean >> >> -----Original Message----- >> From: Savova, Guergana [mailto:[email protected]] >> Sent: Tuesday, December 08, 2015 12:17 PM >> To: [email protected] >> Subject: RE: ctakes with icd10 >> >> Hi Alaa, >> You need to create a resource off the terminology/ontology you want to use >> (in this case ICD9 or ICD10). Then run that resource with cTAKES for the >> fast dictionary lookup. There is cTAKES code and some documentation on how >> to create that resource. By default, cTAKES runs with a resource created >> from the English version of SNOMED CT and RxNORM. >> Hope this helps. >> --Guergana >> >> -----Original Message----- >> From: Alaa al Barari [mailto:[email protected]] >> Sent: Tuesday, December 8, 2015 10:01 AM >> To: [email protected] >> Subject: ctakes with icd10 >> >> Hi, >> >> I downloaded Latest umls version, and I want to know how to make ctakes >> work with icd10 and icd9. >> >> >> Thanks >>
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