Thanks Jessica, looking forward to you.. Just an information that from this email http://mail-archives.apache.org/mod_mbox/ctakes-dev/201508.mbox/%[email protected]%3E Chenpei said that AggregatePlaintextFastUMLSProcessor.xml should already have the Drug NER included.
Regards, - Phúc 2016-02-10 3:51 GMT+07:00 Jessica Glover <[email protected]>: > I believe you need to add an annotator like DrugAggregateCDAProcessor to > the pipeline to get the annotations you seek. I will investigate and write > more soon. > > - Jessica G. > On Feb 9, 2016 2:31 PM, "Miller, Timothy" < > [email protected]> wrote: > > > I'm not that familiar with that module but I can confirm that I was able > > to replicate your output on this example. > > If it helps at all the MedicationMention type does have a span for the > > tylenol mention, but obviously doesn't help with all the dosage, route, > > etc. information you might want. > > Hopefully one of the devs/maintainers of that module will have some idea. > > Tim > > > > > > On 02/09/2016 02:19 PM, Phan HôÌng Phuìc wrote: > > > Hi all, > > > > > > I try to run the sample to get the drug name. > > > Let me describe my steps: > > > - runctakesCVD.bat > > > - Load AE: > > > > > > apache-ctakes-3.2.2\desc\ctakes-clinical-pipeline\desc\analysis_engine\AggregatePlaintextFastUMLSProcessor > > > - Add sample text: "*He is taking 500mg of tylenol, twice a day"* > > > *- *After run, I see a list of result but all type > > > org.apache.ctakes.drugner.type.* are [0] > > > > > > I think it should contain at least drug name "tylenol" in the result. > > > > > > Do I miss something? > > > > > > Thank you, > > > - Phúc > > > > > > > >
