Hi Sean
I am testing the stuff on the fast and AggregratePlainTextUMLSProcessor(slow)
. I found that one of the drug everolimus 2.5 mg is not found by the fast
version. it is actually in RXNORM of my MRCONSO.RRF file.
C2920405|ENG|P|L9442487|PF|S11732013|Y|A18083986|3277628|998191||RXNORM|SBD|998191|*everolimus
2.5 MG* Oral Tablet [Afinitor]|0|N|4352|. Let me know if you have any
inputs on this.
Also other case is :
SENTENCE: higher testosterone levels
JJR NN NNS
|==========|
Procedure
C0202227
C0523912
|==========|
Drug
C0039601
AggregratePlainTextUMLSProcessor is able to find from higher
testosterone levels:
*testosterone levels*
<refsem:UmlsConcept xmi:id="167" codingScheme="SNOMED"
code="104957004" oid="104957004#SNOMED" score="0.0"
disambiguated="false" cui="C0523912" tui="T059"/>
C0523912|ENG|S|L0865889|PF|S1044605|Y|A3209597|1219087010|104957004||SNOMEDCT_US|SY|104957004|Testosterone
level|9|N|256|
I am not able to understand why fast version is not able to do so.
MoreOver in comparison to Metamap, we are not able to do this.
Phrase: higher testosterone levels
Meta Mapping (966):
966 C1295653:High testosterone level (Increased testosterone level)
[Finding]
On Tue, Jan 24, 2017 at 8:19 PM, Finan, Sean <
sean.fi...@childrens.harvard.edu> wrote:
> Hi Shahid,
>
>
>
> I’m glad that the fix worked!
>
> Unfortunately, the fast dictionary format will not work with the old
> Dictionary Lookup Module that is used by AggregratePlainTextUMLSProcessor
>
> You can manually create an updated dictionary for the older module, but it
> is more involved.
>
> In our tests and those done by others the new “fast” lookup has as good or
> better accuracy depending upon the test corpus. Plus it is runs in 1/500
> th the time. I recommend that you stick to it.
>
>
>
> Sean
>
>
>
> *From:* shahid ashraf [mailto:sha...@trialx.com]
> *Sent:* Tuesday, January 24, 2017 5:50 AM
> *To:* Finan, Sean
> *Cc:* dev@ctakes.apache.org; kant2...@googlemail.com; pratik agarwal
>
> *Subject:* Re: Ctakes Dictionary Gui
>
>
>
> Thanks Sean
>
>
>
> That was the case for not finding the class. there were space in the xml
> generated by dictionary-gui.
>
> Also i am curious how we can use new umls with normal
> AggregratePlainTextUMLSProcessor.
>
>
>
>
>
> On Mon, Jan 23, 2017 at 9:36 PM, Finan, Sean <
> sean.fi...@childrens.harvard.edu> wrote:
>
> Ah – there might be an erroneous space in the classname.
>
>
>
> Go to your dictionary settings xml. In the line:
>
> <implementationName>org.apache.ctakes.dictionary.lookup2.concept.
> JdbcConceptFactory</implementationName>
>
>
>
> Look for a space between “JdbcConceptFactory” and “</implementationName>”
>
> If you see a space, remove it.
>
>
>
> It looks like I introduced this bug a few weeks ago.
>
>
>
> Thanks,
>
> Sean
>
>
>
>
>
> *From:* shahid ashraf [mailto:sha...@trialx.com]
> *Sent:* Saturday, January 21, 2017 1:42 PM
> *To:* dev@ctakes.apache.org; Finan, Sean; kant2...@googlemail.com; pratik
> agarwal
> *Subject:* Re: Ctakes Dictionary Gui
>
>
>
> Have put username and password (umls) in custom.xml as well. Still getting
> this error:
>
> 1/22/17 12:09:18 AM - 14: org.apache.uima.tools.cvd.
> MainFrame.handleException(526): SEVERE: Initialization of annotator class
> "org.apache.ctakes.dictionary.lookup2.ae
> <https://urldefense.proofpoint.com/v2/url?u=http-3A__lookup2.ae&d=DwMFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=LaGFaTnSoKexqlXkoxOvEuIP-e7Ktmu3vKI0ZckDzcA&s=WaHWxD5eLKHj4eMgOkvTvzUiNAHAZybtjddO0KE2jgI&e=>
> .DefaultJCasTermAnnotator" failed. (Descriptor:
> file:/usr/local/apache-ctakes-3.2.2/desc/ctakes-dictionary-
> lookup-fast/desc/analysis_engine/UmlsLookupAnnotator.xml)
>
> org.apache.uima.resource.ResourceInitializationException: Initialization
> of annotator class "org.apache.ctakes.dictionary.lookup2.ae
> <https://urldefense.proofpoint.com/v2/url?u=http-3A__lookup2.ae&d=DwMFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=LaGFaTnSoKexqlXkoxOvEuIP-e7Ktmu3vKI0ZckDzcA&s=WaHWxD5eLKHj4eMgOkvTvzUiNAHAZybtjddO0KE2jgI&e=>
> .DefaultJCasTermAnnotator" failed. (Descriptor:
> file:/usr/local/apache-ctakes-3.2.2/desc/ctakes-dictionary-
> lookup-fast/desc/analysis_engine/UmlsLookupAnnotator.xml)
>
> at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
>
> at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
>
> at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
>
> at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
>
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
>
> at org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
>
> at org.apache.uima.analysis_engine.asb.impl.ASB_impl.
> setup(ASB_impl.java:254)
>
> at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initASB(AggregateAnalysisEngine_impl.java:431)
>
> at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
>
> at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
>
> at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
>
> at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
>
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
>
> at org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:354)
>
> at org.apache.uima.tools.cvd.MainFrame.setupAE(MainFrame.java:1484)
>
> at org.apache.uima.tools.cvd.MainFrame.loadAEDescriptor(
> MainFrame.java:476)
>
> at org.apache.uima.tools.cvd.control.AnnotatorOpenEventHandler.
> actionPerformed(AnnotatorOpenEventHandler.java:52)
>
> at javax.swing.AbstractButton.fireActionPerformed(
> AbstractButton.java:2022)
>
> at javax.swing.AbstractButton$Handler.actionPerformed(
> AbstractButton.java:2346)
>
> at javax.swing.DefaultButtonModel.fireActionPerformed(
> DefaultButtonModel.java:402)
>
> at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
>
> at javax.swing.AbstractButton.doClick(AbstractButton.java:376)
>
> at javax.swing.plaf.basic.BasicMenuItemUI.doClick(
> BasicMenuItemUI.java:833)
>
> at com.apple.laf.AquaMenuItemUI.doClick(AquaMenuItemUI.java:157)
>
> at javax.swing.plaf.basic.BasicMenuItemUI$Handler.
> mouseReleased(BasicMenuItemUI.java:877)
>
> at java.awt.Component.processMouseEvent(Component.java:6525)
>
> at javax.swing.JComponent.processMouseEvent(JComponent.java:3324)
>
> at java.awt.Component.processEvent(Component.java:6290)
>
> at java.awt.Container.processEvent(Container.java:2234)
>
> at java.awt.Component.dispatchEventImpl(Component.java:4881)
>
> at java.awt.Container.dispatchEventImpl(Container.java:2292)
>
> at java.awt.Component.dispatchEvent(Component.java:4703)
>
> at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4898)
>
> at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4533)
>
> at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4462)
>
> at java.awt.Container.dispatchEventImpl(Container.java:2278)
>
> at java.awt.Window.dispatchEventImpl(Window.java:2750)
>
> at java.awt.Component.dispatchEvent(Component.java:4703)
>
> at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
>
> at java.awt.EventQueue.access$500(EventQueue.java:97)
>
> at java.awt.EventQueue$3.run(EventQueue.java:709)
>
> at java.awt.EventQueue$3.run(EventQueue.java:703)
>
> at java.security.AccessController.doPrivileged(Native Method)
>
> at java.security.ProtectionDomain$1.doIntersectionPrivilege(
> ProtectionDomain.java:75)
>
> at java.security.ProtectionDomain$1.doIntersectionPrivilege(
> ProtectionDomain.java:86)
>
> at java.awt.EventQueue$4.run(EventQueue.java:731)
>
> at java.awt.EventQueue$4.run(EventQueue.java:729)
>
> at java.security.AccessController.doPrivileged(Native Method)
>
> at java.security.ProtectionDomain$1.doIntersectionPrivilege(
> ProtectionDomain.java:75)
>
> at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
>
> at java.awt.EventDispatchThread.pumpOneEventForFilters(
> EventDispatchThread.java:201)
>
> at java.awt.EventDispatchThread.pumpEventsForFilter(
> EventDispatchThread.java:116)
>
> at java.awt.EventDispatchThread.pumpEventsForHierarchy(
> EventDispatchThread.java:105)
>
> at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
>
> at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
>
> at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
>
> Caused by: org.apache.uima.resource.ResourceInitializationException:
> EXCEPTION MESSAGE LOCALIZATION FAILED: java.util.MissingResourceException:
> Can't find resource for bundle java.util.PropertyResourceBundle, key
> Unknown class org.apache.ctakes.dictionary.lookup2.concept.
> JdbcConceptFactory
>
> at org.apache.ctakes.dictionary.lookup2.ae
> <https://urldefense.proofpoint.com/v2/url?u=http-3A__lookup2.ae&d=DwMFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=LaGFaTnSoKexqlXkoxOvEuIP-e7Ktmu3vKI0ZckDzcA&s=WaHWxD5eLKHj4eMgOkvTvzUiNAHAZybtjddO0KE2jgI&e=>
> .AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:132)
>
> at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
>
> ... 55 more
>
> Caused by:
> org.apache.uima.analysis_engine.annotator.AnnotatorContextException:
> EXCEPTION MESSAGE LOCALIZATION FAILED: java.util.MissingResourceException:
> Can't find resource for bundle java.util.PropertyResourceBundle, key
> Unknown class org.apache.ctakes.dictionary.lookup2.concept.
> JdbcConceptFactory
>
> at org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseConceptFactory(DictionaryDescriptorParser.
> java:255)
>
> at org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseConceptFactories(
> DictionaryDescriptorParser.java:226)
>
> at org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.
> java:133)
>
> at org.apache.ctakes.dictionary.lookup2.ae
> <https://urldefense.proofpoint.com/v2/url?u=http-3A__lookup2.ae&d=DwMFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=LaGFaTnSoKexqlXkoxOvEuIP-e7Ktmu3vKI0ZckDzcA&s=WaHWxD5eLKHj4eMgOkvTvzUiNAHAZybtjddO0KE2jgI&e=>
> .AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:130)
>
> ... 56 more
>
> Caused by: java.lang.ClassNotFoundException: org.apache.ctakes.dictionary.
> lookup2.concept.JdbcConceptFactory
>
> at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
>
> at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
>
> at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331)
>
> at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
>
> at java.lang.Class.forName0(Native Method)
>
> at java.lang.Class.forName(Class.java:264)
>
> at org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseConceptFactory(DictionaryDescriptorParser.
> java:253)
>
> ... 59 more
>
>
>
>
>
> On Sat, Jan 21, 2017 at 5:36 PM, shahid ashraf <sha...@trialx.com> wrote:
>
> Hi I was able to run and produce the new custom umls files. and where put
> under ctakes binary (not dev).
>
>
>
> I changed the name under apache-ctakes-3.2.2/
> desc/ctakes-dictionary-lookup-fast/desc/analysis_engine/
> UmlsLookupAnnotator.xml
>
>
>
> <name>DictionaryDescriptorFile</name>
>
> <description/>
>
> <fileResourceSpecifier>
>
> <fileUrl>file:org/apache/ctakes/dictionary/lookup/fast/
> custom.xml</fileUrl>
>
>
>
> when running AggregatePlantextFastUmlsProcessor.xml I am getting
> following error (not when using old org/apache/ctakes/
> dictionary/lookup/fast/cTakesHsql.xml)
>
>
>
> 5: org.apache.uima.tools.cvd.MainFrame.handleException(526): SEVERE:
> Initialization of annotator class "org.apache.ctakes.dictionary.lookup2.ae
> <https://urldefense.proofpoint.com/v2/url?u=http-3A__lookup2.ae&d=DwMFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=LaGFaTnSoKexqlXkoxOvEuIP-e7Ktmu3vKI0ZckDzcA&s=WaHWxD5eLKHj4eMgOkvTvzUiNAHAZybtjddO0KE2jgI&e=>
> .DefaultJCasTermAnnotator" failed. (Descriptor:
> file:/usr/local/apache-ctakes-3.2.2/desc/ctakes-dictionary-
> lookup-fast/desc/analysis_engine/UmlsLookupAnnotator.xml)
>
> org.apache.uima.resource.ResourceInitializationException: Initialization
> of annotator class "org.apache.ctakes.dictionary.lookup2.ae
> <https://urldefense.proofpoint.com/v2/url?u=http-3A__lookup2.ae&d=DwMFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=LaGFaTnSoKexqlXkoxOvEuIP-e7Ktmu3vKI0ZckDzcA&s=WaHWxD5eLKHj4eMgOkvTvzUiNAHAZybtjddO0KE2jgI&e=>
> .DefaultJCasTermAnnotator" failed. (Descriptor:
> file:/usr/local/apache-ctakes-3.2.2/desc/ctakes-dictionary-
> lookup-fast/desc/analysis_engine/UmlsLookupAnnotator.xml)
>
> at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
>
> at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
>
> at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
>
> at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
>
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
>
> at org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
>
> at org.apache.uima.analysis_engine.asb.impl.ASB_impl.
> setup(ASB_impl.java:254)
>
> at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initASB(AggregateAnalysisEngine_impl.java:431)
>
> at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
>
> at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
>
> at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
>
> at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
>
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
>
> at org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:354)
>
> at org.apache.uima.tools.cvd.MainFrame.setupAE(MainFrame.java:1484)
>
> at org.apache.uima.tools.cvd.MainFrame.loadAEDescriptor(
> MainFrame.java:476)
>
> at org.apache.uima.tools.cvd.control.AnnotatorOpenEventHandler.
> actionPerformed(AnnotatorOpenEventHandler.java:52)
>
> at javax.swing.AbstractButton.fireActionPerformed(
> AbstractButton.java:2022)
>
> at javax.swing.AbstractButton$Handler.actionPerformed(
> AbstractButton.java:2346)
>
> at javax.swing.DefaultButtonModel.fireActionPerformed(
> DefaultButtonModel.java:402)
>
> at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
>
> at javax.swing.AbstractButton.doClick(AbstractButton.java:376)
>
> at javax.swing.plaf.basic.BasicMenuItemUI.doClick(
> BasicMenuItemUI.java:833)
>
> at com.apple.laf.AquaMenuItemUI.doClick(AquaMenuItemUI.java:157)
>
> at javax.swing.plaf.basic.BasicMenuItemUI$Handler.
> mouseReleased(BasicMenuItemUI.java:877)
>
> at java.awt.Component.processMouseEvent(Component.java:6525)
>
> at javax.swing.JComponent.processMouseEvent(JComponent.java:3324)
>
> at java.awt.Component.processEvent(Component.java:6290)
>
> at java.awt.Container.processEvent(Container.java:2234)
>
> at java.awt.Component.dispatchEventImpl(Component.java:4881)
>
> at java.awt.Container.dispatchEventImpl(Container.java:2292)
>
> at java.awt.Component.dispatchEvent(Component.java:4703)
>
> at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4898)
>
> at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4533)
>
> at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4462)
>
> at java.awt.Container.dispatchEventImpl(Container.java:2278)
>
> at java.awt.Window.dispatchEventImpl(Window.java:2750)
>
> at java.awt.Component.dispatchEvent(Component.java:4703)
>
> at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
>
> at java.awt.EventQueue.access$500(EventQueue.java:97)
>
> at java.awt.EventQueue$3.run(EventQueue.java:709)
>
> at java.awt.EventQueue$3.run(EventQueue.java:703)
>
> at java.security.AccessController.doPrivileged(Native Method)
>
> at java.security.ProtectionDomain$1.doIntersectionPrivilege(
> ProtectionDomain.java:75)
>
> at java.security.ProtectionDomain$1.doIntersectionPrivilege(
> ProtectionDomain.java:86)
>
> at java.awt.EventQueue$4.run(EventQueue.java:731)
>
> at java.awt.EventQueue$4.run(EventQueue.java:729)
>
> at java.security.AccessController.doPrivileged(Native Method)
>
> at java.security.ProtectionDomain$1.doIntersectionPrivilege(
> ProtectionDomain.java:75)
>
> at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
>
> at java.awt.EventDispatchThread.pumpOneEventForFilters(
> EventDispatchThread.java:201)
>
> at java.awt.EventDispatchThread.pumpEventsForFilter(
> EventDispatchThread.java:116)
>
> at java.awt.EventDispatchThread.pumpEventsForHierarchy(
> EventDispatchThread.java:105)
>
> at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
>
> at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
>
> at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
>
> Caused by: org.apache.uima.resource.ResourceInitializationException:
> EXCEPTION MESSAGE LOCALIZATION FAILED: java.util.MissingResourceException:
> Can't find resource for bundle java.util.PropertyResourceBundle, key
> Unknown class org.apache.ctakes.dictionary.lookup2.concept.
> JdbcConceptFactory
>
> at org.apache.ctakes.dictionary.lookup2.ae
> <https://urldefense.proofpoint.com/v2/url?u=http-3A__lookup2.ae&d=DwMFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=LaGFaTnSoKexqlXkoxOvEuIP-e7Ktmu3vKI0ZckDzcA&s=WaHWxD5eLKHj4eMgOkvTvzUiNAHAZybtjddO0KE2jgI&e=>
> .AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:132)
>
> at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
>
> ... 55 more
>
> Caused by:
> org.apache.uima.analysis_engine.annotator.AnnotatorContextException:
> EXCEPTION MESSAGE LOCALIZATION FAILED: java.util.MissingResourceException:
> Can't find resource for bundle java.util.PropertyResourceBundle, key
> Unknown class org.apache.ctakes.dictionary.lookup2.concept.
> JdbcConceptFactory
>
> at org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseConceptFactory(DictionaryDescriptorParser.
> java:255)
>
> at org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseConceptFactories(
> DictionaryDescriptorParser.java:226)
>
> at org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.
> java:133)
>
> at org.apache.ctakes.dictionary.lookup2.ae
> <https://urldefense.proofpoint.com/v2/url?u=http-3A__lookup2.ae&d=DwMFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=LaGFaTnSoKexqlXkoxOvEuIP-e7Ktmu3vKI0ZckDzcA&s=WaHWxD5eLKHj4eMgOkvTvzUiNAHAZybtjddO0KE2jgI&e=>
> .AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:130)
>
> ... 56 more
>
> Caused by: java.lang.ClassNotFoundException: org.apache.ctakes.dictionary.
> lookup2.concept.JdbcConceptFactory
>
> at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
>
> at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
>
> at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331)
>
> at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
>
> at java.lang.Class.forName0(Native Method)
>
> at java.lang.Class.forName(Class.java:264)
>
> at org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseConceptFactory(DictionaryDescriptorParser.
> java:253)
>
> ... 59 more
>
>
>
> --
>
> with Regards
>
> Shahid Ashraf
>
>
>
>
>
> --
>
> with Regards
>
> Shahid Ashraf
>
>
>
>
>
> --
>
> with Regards
>
> Shahid Ashraf
>
--
with Regards
Shahid Ashraf
