A while ago our physician colleague John Green created 16 realistically looking (but fake) clinical notes. Many thanks again, John!
These notes are in ctakes-examples/data/notes. We now volunteer to annotate them with gold annotations. The main elements with their attributes are: Medications, Attributes ::= span associatedCode change_status_model conditional dosage_model duration_model end_date form_model frequency_model generic negation_indicator route_model start_date strength_model subject uncertainty_indicator Signs/Symptoms, Attributes ::= associated_code body_location conditional course duration end_time generic historyOf negation_indicator relative_temporal_context severity start_time subject uncertainty_indicator Anatomical Sites, Attributes ::= associatedCode conditional generic negation_indicator subject uncertainty_indicator Disease/DisordersAttributes ::= associated_code body_location conditional course duration end_time generic historyOf negation_indicator relative_temporal_context severity start_time subject uncertainty_indicator Procedures, Attributes ::= associated_code body_location conditional duration end_time generic historyOf method negation_indicator relative_temporal_context start_time subject uncertainty_indicator We expect to have the gold annotations by end of March. We are using the Anafora annotation tool (https://github.com/weitechen/anafora ) and will release the annotations in the xml format. Regards, --Guergana Guergana Savova, PhD, FACMI Associate Professor PI Natural Language Processing Lab Boston Children's Hospital and Harvard Medical School 300 Longwood Avenue Mailstop: BCH3092 Enders 144.1 Boston, MA 02115 Tel: (617) 919-2972 Fax: (617) 730-0817 guergana.sav...@childrens.harvard.edu<mailto:guergana.sav...@childrens.harvard.edu> Harvard Scholar: http://scholar.harvard.edu/guergana_k_savova/biocv ctakes.apache.org thyme.healthnlp.org cancer.healthnlp.org share.healthnlp.org
