Sean .... Anything on this... On Wed, Feb 15, 2017 at 3:21 PM, shahid ashraf <sha...@trialx.com> wrote:
> To Add more here is the query on dictionary > > > SELECT * FROM "PUBLIC"."CUI_TERMS" WHERE "TEXT" LIKE 'herpes zoster' > > 42338 > > 1 > > 2 > > herpes zoster > > zoster > > > On Wed, Feb 15, 2017 at 3:14 PM, shahid ashraf <sha...@trialx.com> wrote: > >> Hi Sean >> >> I have created a dictionary with 6-7 vocabs with filtered semtypes. that >> includes *[Disease or Syndrome]* >> When i search the term "herpes zoster" i am getting multiple cuis e.g >> >> Ctakes matches: *"herpes" *to <refsem:UmlsConcept xmi:id="133" >> codingScheme="CHV" code="6101" score="0.0" disambiguated="false" cui=" >> C0019340" tui="T047" preferredText="Herpes NOS"/> >> <refsem:UmlsConcept xmi:id="143" codingScheme="MDR" code="10019944" score >> ="0.0" disambiguated="false" cui="C0019340" tui="T047" preferredText="Herpes >> NOS"/> >> and *"herpes zoster"* >> <refsem:UmlsConcept xmi:id="97" codingScheme="SNOMEDCT_US" code="19551004 >> " score="0.0" disambiguated="false" cui="C0042338" tui="T005" >> preferredText="Human herpesvirus 3"/> >> <refsem:UmlsConcept xmi:id="67" codingScheme="MSH" code="D014645" score=" >> 0.0" disambiguated="false" cui="C0042338" tui="T005" preferredText="Human >> herpesvirus 3"/> >> >> My Question is why not it returned the "herpes zoster" match to MDR >> instead of MSH. When i did few greps on MRCONSO both vocabs have "herpes >> zoster(C0019340)" >> >> grep '*C0042338*' MRCONSO.RRF | grep "Herpes zoster" >> *C0042338|ENG|S|L0019360|PF|S0377939|Y|A2933029|479641014|19551004||SNOMEDCT_US|SY|19551004|Herpes >> zoster|9|N|256|* >> C0042338|ENG|S|L0019365|PF|S0048120|Y|A26631650||M0022527|D014645|MSH|ET|D014645|Herpes >> zoster Virus|0|N|256| >> C0042338|ENG|S|L0019365|VO|S0048121|Y|A0067793||M0022527|D014645|MSH|PM|D014645|Herpes >> zoster Viruses|0|N|256| >> C0042338|ENG|S|L0028839|PF|S0068313|Y|A26639692||M0022527|D014645|MSH|ET|D014645|Ocular >> Herpes zoster Virus|0|N|256| >> C0042338|ENG|S|L1105581|PF|S1327080|Y|A3286316|479640010|195 >> 51004||SNOMEDCT_US|SY|19551004|HZ - Herpes zoster virus|9|N|256| >> C0042338|ENG|S|L1105582|PF|S1327081|Y|A3286317|479637010|195 >> 51004||SNOMEDCT_US|SY|19551004|HZ - Herpes zoster|9|N|256| >> ➜ * META grep 'C0019360' MRCONSO.RRF | grep "MDR"* >> *C0019360|ENG|S|L0019360|VC|S0377939|N|A0421203|||10019974|MDR|PT|10019974|Herpes >> zoster|3|N|256|* >> C0019360|ENG|S|L0019360|VC|S0377939|N|A25726963|||10019974|MDR|LLT|10019974|Herpes >> zoster|3|N|256| >> C0019360|ENG|S|L0019360|VO|S0660815|Y|A25702167|||10019974|MDR|LLT|10019982|Herpes >> zoster NOS|3|N|256| >> C0019360|ENG|S|L0036967|PF|S0085594|N|A25745497|||10019974| >> MDR|LLT|10040555|Shingles|3|N|256| >> C0019360|ENG|S|L0043516|PF|S0100676|N|A25732030|||10019974| >> MDR|LLT|10067526|Zona|3|N|256| >> >> 2) .. Also how i can prioritize this to return MDR based CUI ??? >> >> -- >> with Regards >> Shahid Ashraf >> > > > > -- > with Regards > Shahid Ashraf > -- with Regards Shahid Ashraf
