Hi,
We have deployed ctakes temporal demo application in Tomcat server and its
downloaded from
https://github.com/healthnlp/examples/tree/master/ctakes-temporal-demo
While testing the demo locally, we could see some differences in the output as
compared to the hosted temporal example URL's output. Also we observed the few
warnings and errors as mentioned below in the server console,
08 Sep 2017 15:48:45 INFO AbstractJCasTermAnnotator - Finished processing
08 Sep 2017 15:48:45 WARN DocumentIDAnnotationUtil - Unable to find
DocumentIDAnnotation
08 Sep 2017 15:48:45 INFO MaxentParserWrapper - Started processing:
UnknownDocument3
08 Sep 2017 15:48:46 INFO MaxentParserWrapper - Done parsing: UnknownDocument3
Null value found in Feature(<Time-Class->, <NULL>) from [Feature(<mention1>,
<weight>), Feature(<mention1_FirstCovered_0_1_0>, <weight>),
Feature(<mention1_LastCovered_0_1_0>, <weight>),
Null value found in Feature(<Time-Class->, <NULL>) from [Feature(<mention1>,
<Weight>), Feature(<mention1_FirstCovered_0_1_0>, <Weight>),
Feature(<mention1_LastCovered_0_1_0>, <Weight>),
Null value found in Feature(<Time-Class->, <NULL>) from [Feature(<mention1>,
<count>), Feature(<mention1_FirstCovered_0_1_0>, <count>),
Feature(<mention1_LastCovered_0_1_0>, <count>), Fe
Null value found in Feature(<Time-Class->, <NULL>) from [Feature(<mention1>,
<intake>), Feature(<mention1_FirstCovered_0_1_0>, <intake>),
Feature(<mention1_LastCovered_0_1_0>, <intake>),
Null value found in Feature(<Time-Class->, <NULL>) from [Feature(<mention1>,
<calories>), Feature(<mention1_FirstCovered_0_1_0>, <calories>),
Feature(<mention1_LastCovered_0_1_0>, <calor
Null value found in Feature(<Time-Class->, <NULL>) from [Feature(<mention1>,
<pain>), Feature(<mention1_FirstCovered_0_1_0>, <pain>),
Feature(<mention1_LastCovered_0_1_0>, <pain>), Featu
>), Feature(<mention1_Following_0_3_1>, <OOB1>),
>Feature(<mention1_Following_0_3_2>, <OOB2>), Feature(<mention2>, <aspirin a
>day>), Feature(<mention2_FirstCovered_0_1_0>, <aspirin>), Fea
Sample output from local deployment:
SENTENCE: She was instructed to drink 2-3 cans of liquid supplement to help
promote weight gain .
PRP VBD VBN TO VB NNS IN NN NN TO VB
JJ NN NN
|========| |===| |===| |======| |========|
|===| |=======| |===|
Event Event Event Drug Event
Event Procedure Event
C1697794
C1305866
|=============|
Finding
C0043094
TLINKS: cans CONTAINS help , weight CONTAINS gain
Sample output from hosted demo deployment:
SENTENCE: She was instructed to drink 2- 3 cans of liquid supplement to
help promote weight gain.
PRP VBD VBN TO VB NNS IN NN NN TO
VB JJ NN NN
|========| |===| |===| |======| |========|
|=======|
Event Timex Event Drug Event
Procedure
C1697794
C1305866
|============|
Finding
C0043094
TLINKS: 2-3 CONTAINS instructed , 2-3 CONTAINS cans , 2-3 CONTAINS
supplement , 2-3 CONTAINS weight
Could anyone foresee any deployment issue or any misconfiguration here?
Regards,
Gandhi
This email and any files transmitted with it are confidential and intended
solely for the use of the individual or entity to whom they are addressed. If
you are not the named addressee you should not disseminate, distribute or copy
this e-mail. Please notify the sender or system manager by email immediately if
you have received this e-mail by mistake and delete this e-mail from your
system. If you are not the intended recipient you are notified that disclosing,
copying, distributing or taking any action in reliance on the contents of this
information is strictly prohibited and against the law.
