Hi, Lani and others, two days ago I asked a similar question to the user list @ctakes.apache.org but I realize now that dev list would be a better forum, regarding my inquiry. The question was:
> Could anyone clarify me if cTAKES-generated annotations follow some standard format or ontology, like Web Annotation Ontology (W3C), BioC, and others? It would facilitate interoperability issues. I will be grateful if anyone here can send me this information. Thanks, Marcello On Thu, Oct 26, 2017 at 5:22 AM, Lani Uni <[email protected]> wrote: > Hello all, > > I am using UMLS to annotate medical forms and would like to know which > terminology (SAB in MRCONSO) is used by cTAKES for the generated annotation. > Is there a way to get this information (something like AUI)? > I see in OntologyConcept one can get terminology using getCodingScheme, > but this only gives me back info about UMLS. > On the other hand, getPreferredText in UmlsConcept seems to give me the PN > or PT of an concept but not the actual term used for annotation generation. > Any idea to help me a step further? > > best, > Lani
