By the way, if you use the exec goal you can do things like pass more memory or
start with the default clinical pipeline, etc. Sean
<profile>
<id>clinicalGui</id>
<activation>
<property>
<name>clinicalGui</name>
</property>
</activation>
<build>
<plugins>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>exec-maven-plugin</artifactId>
<version>1.2.1</version>
<executions>
<execution>
<!-- depends on other modules being on
classpath -->
<phase>compile</phase>
<goals>
<!--<goal>java</goal>-->
<!-- The java goal runs in the same jvm as
maven, meaning we can't pass Xmx -->
<goal>exec</goal>
</goals>
</execution>
</executions>
<configuration>
<executable>java</executable>
<includeProjectDependencies>true</includeProjectDependencies>
<includePluginDependencies>true</includePluginDependencies>
<workingDirectory>${project.parent.basedir}</workingDirectory>
<arguments>
<argument>-classpath</argument>
<classpath/>
<argument>-Xmx4G</argument>
<argument>org.apache.ctakes.gui.pipeline.PiperRunnerGui</argument>
<argument>-p</argument>
<argument>resources/org/apache/ctakes/clinical/pipeline/DefaultFastPipeline.piper</argument>
</arguments>
</configuration>
</plugin>
</plugins>
</build>
</profile>
________________________________________
From: Reed Villanueva <villanuevar...@gmail.com>
Sent: Thursday, March 29, 2018 4:08 PM
To: dev@ctakes.apache.org
Subject: Failing to compile runPiperGui profile in Intellij [EXTERNAL]
Using the instructions of the dev guide (
https://urldefense.proofpoint.com/v2/url?u=https-3A__cwiki.apache.org_confluence_display_CTAKES_cTAKES-2B4.0-2BDeveloper-2BInstall-2BGuide-23cTAKES4.0DeveloperInstallGuide-2DRunningUIMACVDwithMaven&d=DwIFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=xSzM-Gf8hgP4XQgXM74hPSwUsXhvzcKWWkVfDnaid5Y&s=7uzLWQ_UTWoiVqMKOzfom8yVgwXpBoHOeKpqzzlrWok&e=)
to try to compile the runPiperGui profile in Intellij IDE, I get the
following error:
[INFO] ctakes-examples .................................... FAILURE [
> 9.248 s]
> [INFO] Apache cTAKES Resources ctakes-ytex-res ............ SKIPPED
> [INFO] Apache cTAKES YTEX ................................. SKIPPED
> [INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
> [INFO] Apache cTAKES YTEX Web ............................. SKIPPED
> [INFO] Apache cTAKES Distribution ......................... SKIPPED
> [INFO] Apache cTAKES Regression-test ...................... SKIPPED
> [INFO] Apache cTAKES template filler ...................... SKIPPED
> [INFO]
> ------------------------------------------------------------------------
> [INFO] BUILD FAILURE
> [INFO]
> ------------------------------------------------------------------------
> [INFO] Total time: 20.514 s
> [INFO] Finished at: 2018-03-29T09:38:11-10:00
> [INFO] Final Memory: 72M/1300M
> [INFO]
> ------------------------------------------------------------------------
> [ERROR] Failed to execute goal
> org.codehaus.mojo:exec-maven-plugin:1.2.1:java (default) on project
> ctakes-examples: Unable to parse configuration of mojo
> org.codehaus.mojo:exec-maven-plugin:1.2.1:java for parameter arguments:
> Cannot store value into array: ArrayStoreException -> [Help 1]
Don't work with java often, but googling the error, looking at this stack
overflow post (
https://urldefense.proofpoint.com/v2/url?u=https-3A__stackoverflow.com_questions_23832192_mvn-2Dexecexec-2Dand-2Dmvn-2Dexecjava-2Ddifference&d=DwIFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=xSzM-Gf8hgP4XQgXM74hPSwUsXhvzcKWWkVfDnaid5Y&s=lKgucjFz23lmBLcQEyhJpt_kX_bc4cZm3kVaQj3R5-I&e=),
and taking a shot in the dark, I changed the
trunk/ctakes-examples/pom.xml's execution goal for the
org.codehaus.mojo.exec-maven-plugin plugin from
<plugins>
> <plugin>
> <groupId>org.codehaus.mojo</groupId>
> <artifactId>exec-maven-plugin</artifactId>
> <executions>
> <execution>
> <goals>
> <goal>java</goal>
> </goals>
> </execution>
> </executions>
> <configuration>
>
> to
> <plugins>
> <plugin>
> <groupId>org.codehaus.mojo</groupId>
> <artifactId>exec-maven-plugin</artifactId>
> <executions>
> <execution>
> <goals>
> <goal>exec</goal>
> </goals>
> </execution>
> </executions>
> <configuration>
>
> I now seem to be able to compile the piper submitter GUI (though the error
does show up after I close the GUI).
Could someone let me know what is happening here? Is this normal?
Thanks.
