Many thanks Peter for the prompt response! I will try this and will update the thread.
Also, can I please ask: I noticed that after the test ( I launch PiperRunnerGui on Intellij and a build is done automatically before any launch) the records (the insert commands) I removed earlier reappear again -- I take it this is normal behaviour for the non-synonym entries? Thank you! Kind Regards, Eugenia Monogyiou | NTT Data UK Consulting & IT Solutions Ltd. 1 Royal Exchange, London EC3V 3DG Mob: +44 (0)7971623683 Email: eugenia.monogy...@nttdata.com -----Original Message----- From: Peter Abramowitsch <pabramowit...@gmail.com> Sent: 15 February 2021 15:09 To: dev@ctakes.apache.org Subject: Re: Dictionary "bad" codes Hi Eugenia There may be better ways to do this, but I would insert these as Synonyms in the CUI_TERMS table. The concept is already there: insert this: INSERT INTO CUI_TERMS VALUES(1303258,0,1,'stemi','stemi') the concept is already declared here INSERT INTO PREFTERM VALUES(1303258,'Acute ST segment elevation myocardial infarction (disorder)') On Mon, Feb 15, 2021 at 3:46 PM Monogyiou, Eugenia < eugenia.monogy...@nttdata.com> wrote: > Hello, > > Peter we had a discussion quite some time ago about additions and > removals that would result into a good dictionary. I have a specific > example I would ask for your help please (or anyone else that has an > idea :) ) > > So STEMI and NSTEMI are correctly annotated but "Code" and "Coding Scheme" > are null... when that happens in my tests it is usually because of a > badly formed term interpretation which is to be discarded anyway. I > have found similar cases mentioned as "ghost" terms in the UMLS > documentation; in this case, however, they are valid interpretations > and quite important to my tests because I am working on heart attack and > cardiac disease cohorts. > > I tried associating with the appropriate code by adding the following > inserts but it did not work ... > > INSERT INTO UPPER VALUES(1276061,'','NSTEMI','',31,1) > INSERT INTO UPPER VALUES(1303258,'','STEMI','',31,1) > > Any ideas please? > > Many thanks in advance, > > Kind Regards, > > Eugenia Monogyiou | NTT Data UK > Consulting & IT Solutions Ltd. 1 Royal Exchange, London EC3V 3DG > > Mob: +44 (0)7971623683 Email: eugenia.monogy...@nttdata.com<mailto: > eugenia.monogy...@nttdata.com> > > Disclaimer: This email and any attachments are sent in strictest > confidence for the sole use of the addressee and may contain legally > privileged, confidential, and proprietary data. If you are not the > intended recipient, please advise the sender by replying promptly to > this email and then delete and destroy this email and any attachments > without any further use, copying or forwarding. > Disclaimer: This email and any attachments are sent in strictest confidence for the sole use of the addressee and may contain legally privileged, confidential, and proprietary data. If you are not the intended recipient, please advise the sender by replying promptly to this email and then delete and destroy this email and any attachments without any further use, copying or forwarding.
