I restarted, ran bin/testdata/run-all.sh, but running list in hbase
shell still says:
ERROR: org.apache.hadoop.hbase.ipc.ServerNotRunningYetException:
Server is not running yet
at
org.apache.hadoop.hbase.master.HMaster.checkServiceStarted(HMaster.java:2296)
at
org.apache.hadoop.hbase.master.MasterRpcServices.isMasterRunning(MasterRpcServices.java:936)
at
org.apache.hadoop.hbase.protobuf.generated.MasterProtos$MasterService$2.callBlockingMethod(MasterProtos.java:55654)
at org.apache.hadoop.hbase.ipc.RpcServer.call(RpcServer.java:2170)
at org.apache.hadoop.hbase.ipc.CallRunner.run(CallRunner.java:109)
at
org.apache.hadoop.hbase.ipc.RpcExecutor.consumerLoop(RpcExecutor.java:134)
at org.apache.hadoop.hbase.ipc.RpcExecutor$1.run(RpcExecutor.java:109)
at java.lang.Thread.run(Thread.java:745)
And I'm getting the a litany of warnings in Hbase master log:
16/08/05 13:02:43 WARN impl.MetricsConfig: Cannot locate
configuration: tried
hadoop-metrics2-hbase.properties,hadoop-metrics2.properties
...
16/08/05 13:02:54 WARN shortcircuit.ShortCircuitCache:
ShortCircuitCache(0x12439978): failed to load
1073764575_BP-1490185442-127.0.0.1-1456935654337
java.lang.NullPointerException
...
16/08/05 13:02:54 WARN hdfs.BlockReaderFactory:
BlockReaderFactory(fileName=/hbase/MasterProcWALs/state-00000000000000003172.log,
block=BP-1490185442-127.0.0.1-1456935654337:blk_1073764629_23805):
error creating ShortCircuitReplica.
java.io.EOFException: unexpected EOF while reading metadata file header
...
16/08/05 13:02:54 WARN hdfs.BlockReaderFactory: I/O error constructing
remote block reader.
java.net.SocketException: Too many open files
...
16/08/05 13:02:55 WARN hdfs.BlockReaderFactory:
BlockReaderFactory(fileName=/hbase/MasterProcWALs/state-00000000000000003172.log,
block=BP-1490185442-127.0.0.1-1456935654337:blk_1073764629_23805):
error creating ShortCircuitReplica.
java.io.IOException: Illegal seek
On Mon, Jul 25, 2016 at 6:31 AM, Jim Apple <[email protected]> wrote:
> The NN and DNs have 600-800 files open each, and my ulimit is 1024 per
> process. On the machine as a whole, ls | wc -l is 1047067.
>
> proc_nodemanager and proc_regionserver have a ton of open files: tens
> of thousands each. For instance, nodemanager has 1200 fds pointing to
> one of three different zookeeper jars.
>
>
> On Sun, Jul 24, 2016 at 9:49 PM, Martin Grund (Das Grundprinzip.de)
> <[email protected]> wrote:
>> One idea is to check your ulimit for file descriptors and run `lsof | grep
>> wc -l` to see if you for some reason exceeded the limit. Otherwise, a fresh
>> reboot might help to figure out if you somewhere have a spare process
>> hogging FDs.
>>
>> On Sun, Jul 24, 2016 at 8:09 PM Jim Apple <[email protected]> wrote:
>>
>>> The NN and DN logs are empty.
>>>
>>> I bin/kill-all.sh at the beginning of this, so I assume that nothing
>>> is taking them except for my little Impala work.
>>>
>>> On Sun, Jul 24, 2016 at 8:03 PM, Bharath Vissapragada
>>> <[email protected]> wrote:
>>> > Based on
>>> >
>>> > 16/07/24 18:36:08 WARN hdfs.BlockReaderFactory: I/O error constructing
>>> > remote block reader.
>>> > java.net.SocketException: Too many open files
>>> >
>>> > 16/07/24 18:36:08 WARN hdfs.DFSClient: Failed to connect to
>>> > /127.0.0.1:31000 for block, add to deadNodes and continue.
>>> > java.net.SocketException: Too many open files
>>> >
>>> > I'm guessing your hdfs instance might be overloaded (check the NN/DN
>>> logs).
>>> > HMaster is unable to connect to NN while opening regions and hence
>>> throwing
>>> > the error.
>>> >
>>> > On Mon, Jul 25, 2016 at 8:05 AM, Jim Apple <[email protected]> wrote:
>>> >
>>> >> Several thousand lines of things like
>>> >>
>>> >> WARN shortcircuit.ShortCircuitCache: ShortCircuitCache(0x419c7df4):
>>> >> failed to load 1073764575_BP-1490185442-127.0.0.1-1456935654337
>>> >>
>>> >> java.lang.NullPointerException at
>>> >>
>>> >>
>>> org.apache.hadoop.hdfs.shortcircuit.ShortCircuitReplica.<init>(ShortCircuitReplica.java:126)
>>> >> ...
>>> >>
>>> >> 16/07/24 18:36:08 WARN hdfs.BlockReaderFactory:
>>> >>
>>> >>
>>> BlockReaderFactory(fileName=/hbase/MasterProcWALs/state-00000000000000003172.log,
>>> >> block=BP-1490185442-127.0.0.1-1456935654337:blk_1073764629_23805):
>>> >> error creating ShortCircuitReplica.
>>> >>
>>> >> java.io.EOFException: unexpected EOF while reading metadata file header
>>> >>
>>> >> 16/07/24 18:36:08 WARN hdfs.BlockReaderFactory: I/O error constructing
>>> >> remote block reader.
>>> >> java.net.SocketException: Too many open files
>>> >>
>>> >> 16/07/24 18:36:08 WARN hdfs.DFSClient: Failed to connect to
>>> >> /127.0.0.1:31000 for block, add to deadNodes and continue.
>>> >> java.net.SocketException: Too many open files
>>> >>
>>> >> 16/07/24 18:36:08 INFO hdfs.DFSClient: Could not obtain
>>> >> BP-1490185442-127.0.0.1-1456935654337:blk_1073764629_23805 from any
>>> >> node: java.io.IOException: No live nodes contain block
>>> >> BP-1490185442-127.0.0.1-1456935654337:blk_1073764629_23805 a
>>> >> fter checking nodes =
>>> >> [DatanodeInfoWithStorage[127.0.0.1:31000
>>> >> ,DS-0232508a-5512-4827-bcaf-c922f1e65eb1,DISK]],
>>> >> ignoredNodes = null No live nodes contain current block Block
>>> >> locations: DatanodeInfoWithStorage[127.0.0.1:31000,DS-0232508a-551
>>> >> 2-4827-bcaf-c922f1e65eb1,DISK] Dead nodes:
>>> >> DatanodeInfoWithStorage[127.0.0.1:31000
>>> >> ,DS-0232508a-5512-4827-bcaf-c922f1e65eb1,DISK].
>>> >> Will get new block locations from namenode and retry...
>>> >> 16/07/24 18:36:08 WARN hdfs.DFSClient: DFS chooseDataNode: got # 1
>>> >> IOException, will wait for 2772.7114628272548 msec.
>>> >> 16/07/24 18:36:11 WARN hdfs.BlockReaderFactory:
>>> >>
>>> >>
>>> BlockReaderFactory(fileName=/hbase/MasterProcWALs/state-00000000000000003172.log,
>>> >> block=BP-1490185442-127.0.0.1-1456935654337:blk_1073764629_23805):
>>> >> error creating ShortCircuitReplica.
>>> >> java.io.IOException: Illegal seek
>>> >> at sun.nio.ch.FileDispatcherImpl.pread0(Native Method)
>>> >>
>>> >> On Sun, Jul 24, 2016 at 7:24 PM, Bharath Vissapragada
>>> >> <[email protected]> wrote:
>>> >> > Do you see something in the HMaster log? From the error it looks like
>>> the
>>> >> > Hbase master hasn't started properly for some reason.
>>> >> >
>>> >> > On Mon, Jul 25, 2016 at 6:08 AM, Jim Apple <[email protected]>
>>> wrote:
>>> >> >
>>> >> >> I tried reloading the data with
>>> >> >>
>>> >> >> ./bin/load-data.py --workloads functional-query
>>> >> >>
>>> >> >> but that gave errors like
>>> >> >>
>>> >> >> Executing HBase Command: hbase shell
>>> >> >> load-functional-query-core-hbase-generated.create
>>> >> >> 16/07/24 17:19:39 INFO Configuration.deprecation: hadoop.native.lib
>>> is
>>> >> >> deprecated. Instead, use io.native.lib.available
>>> >> >> SLF4J: Class path contains multiple SLF4J bindings.
>>> >> >> SLF4J: Found binding in
>>> >> >>
>>> >> >>
>>> >>
>>> [jar:file:/opt/Impala-Toolchain/cdh_components/hbase-1.2.0-cdh5.9.0-SNAPSHOT/lib/slf4j-log4j12-1.7.5.jar!/org/slf4j/impl/StaticLoggerBinder.class]
>>> >> >> SLF4J: Found binding in
>>> >> >>
>>> >> >>
>>> >>
>>> [jar:file:/opt/Impala-Toolchain/cdh_components/hadoop-2.6.0-cdh5.9.0-SNAPSHOT/share/hadoop/common/lib/slf4j-log4j12-1.7.5.jar!/org/slf4j/impl/StaticLoggerBinder.class]
>>> >> >> SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an
>>> >> >> explanation.
>>> >> >> SLF4J: Actual binding is of type [org.slf4j.impl.Log4jLoggerFactory]
>>> >> >>
>>> >> >> ERROR: Can't get the locations
>>> >> >>
>>> >> >> Here is some help for this command:
>>> >> >> Start disable of named table:
>>> >> >> hbase> disable 't1'
>>> >> >> hbase> disable 'ns1:t1'
>>> >> >>
>>> >> >> ERROR: Can't get master address from ZooKeeper; znode data == null
>>> >> >>
>>> >> >> On Sun, Jul 24, 2016 at 5:12 PM, Jim Apple <[email protected]>
>>> >> wrote:
>>> >> >> > I'm having trouble with my HBase environment, and it's preventing
>>> me
>>> >> >> > from running bin/run-all-tests.sh. I am on Ubuntu 14.04. I have
>>> tried
>>> >> >> > this with a clean build, and I have tried unset LD_LIBRARY_PATH &&
>>> >> >> > bin/impala-config.sh, and I have tried ./testdata/bin/run-all.sh
>>> >> >> >
>>> >> >> > Here is the error I get from compute stats:
>>> >> >> > (./testdata/bin/compute-table-stats.sh)
>>> >> >> >
>>> >> >> > Executing: compute stats functional_hbase.alltypessmall
>>> >> >> > -> Error: ImpalaBeeswaxException:
>>> >> >> > Query aborted:RuntimeException: couldn't retrieve HBase table
>>> >> >> > (functional_hbase.alltypessmall) info:
>>> >> >> > Unable to find region for in functional_hbase.alltypessmall after
>>> 35
>>> >> >> tries.
>>> >> >> > CAUSED BY: NoServerForRegionException: Unable to find region for
>>> in
>>> >> >> > functional_hbase.alltypessmall after 35 tries.
>>> >> >> >
>>> >> >> > Here is a snippet of the error in ./testdata/bin/split-hbase.sh
>>> >> >> >
>>> >> >> > Sun Jul 24 15:24:52 PDT 2016,
>>> >> >> > RpcRetryingCaller{globalStartTime=1469399003900, pause=100,
>>> >> >> > retries=31}, org.apache.hadoop.hbase.MasterNotRunningException:
>>> >> >> > com.google.protobuf.ServiceException:
>>> >> >> >
>>> >> >>
>>> >>
>>> org.apache.hadoop.hbase.ipc.RemoteWithExtrasException(org.apache.hadoop.hbase.ipc.ServerNotRunningYetException):
>>> >> >> > org.apache.hadoop.hbase.ipc.ServerNotRunningYetException: Server is
>>> >> >> > not running yet
>>> >> >> >
>>> >> >> > I tried ./bin/create_testdata.sh, but that exited almost
>>> immediately
>>> >> >> > with no error.
>>> >> >> >
>>> >> >> > Has anyone else seen and solved this before?
>>> >> >>
>>> >> >
>>> >> >
>>> >> >
>>> >> > --
>>> >> > Thanks,
>>> >> > Bharath
>>> >>
>>> >
>>> >
>>> >
>>> > --
>>> > Thanks,
>>> > Bharath
>>>
