Github user afs commented on the issue:

    https://github.com/apache/jena/pull/196
  
    Yes - this makes overriding unnecessary. The second commit on this PR takes 
it out of GraphTDB for the same reason.
    
    Ideally, maybe, GraphBase should provide a safer set (no iterator remove, 
no value indexing) and GraphMem / GraphMemBase add the specific capabilities.
    
    Then the InfGraphs are probably inconsistent as their capabilities 
partially rely on their base graph.
    
    More evidence Capabilities are not used for real.



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