Github user mjpost commented on the pull request:
https://github.com/apache/incubator-joshua/pull/12#issuecomment-222118458
On a hunch, I went through and removed all the calls LOG.*() in Decoder,
DecoderThread, JoshuaDecoder, Translation, Chart, DotChart, and
ComputeNodeResult. This fixed the problem; the decoder now runs as fast as
before.
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