Lewis John McGibbney commented on JOSHUA-312:

Thanks [~post], to be specific, if I run a pipeline and it crashes... say at 
Thrax execution (another ticket coming for that very soon), then I attempt to 
re-run the exact same pipeline, then the alignment is always re-done even 
though material is cached in the working directory. 
Does that make sense? If not then I can paste evidence of it happening as code 
samples below. Please let me know. Thanks

> Alignment is never cached
> -------------------------
>                 Key: JOSHUA-312
>                 URL: https://issues.apache.org/jira/browse/JOSHUA-312
>             Project: Joshua
>          Issue Type: Improvement
>          Components: alignment
>    Affects Versions: 6.0.5
>            Reporter: Lewis John McGibbney
>            Priority: Critical
>             Fix For: 6.2
> Say if a pipeline fails after alignment. The alignment result is never cached 
> and it becomes necessary to undertake alignment... again!
> We should investigate the process for caching alignments as it would really 
> speed up rerunning end-to-end pipelines for large input datasets.

This message was sent by Atlassian JIRA

Reply via email to