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https://issues.apache.org/jira/browse/JOSHUA-312?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15514037#comment-15514037
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Lewis John McGibbney commented on JOSHUA-312:
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Thanks [~post], to be specific, if I run a pipeline and it crashes... say at
Thrax execution (another ticket coming for that very soon), then I attempt to
re-run the exact same pipeline, then the alignment is always re-done even
though material is cached in the working directory.
Does that make sense? If not then I can paste evidence of it happening as code
samples below. Please let me know. Thanks
> Alignment is never cached
> -------------------------
>
> Key: JOSHUA-312
> URL: https://issues.apache.org/jira/browse/JOSHUA-312
> Project: Joshua
> Issue Type: Improvement
> Components: alignment
> Affects Versions: 6.0.5
> Reporter: Lewis John McGibbney
> Priority: Critical
> Fix For: 6.2
>
>
> Say if a pipeline fails after alignment. The alignment result is never cached
> and it becomes necessary to undertake alignment... again!
> We should investigate the process for caching alignments as it would really
> speed up rerunning end-to-end pipelines for large input datasets.
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