FYI - I tried this out today, and found that I get this same error on
the destination server (eg. the 1.9 standalone). Looking into this a
little more, I see that on my source server (eg. the existing 1.6
instance I want to test), I am getting an out of memory error during the
HibernateTestingDao.generateTestDataSet method (specifically line 107):
ERROR - LoggingAdvice.invoke(111) |2012-02-10 10:13:16,108| An error
occurred while executing this method. Error message: Java heap space
java.lang.OutOfMemoryError: Java heap space
So, this is likely the source of the problem...
Mike
On 01/23/2012 02:23 AM, Lara Kellett wrote:
Did a bit of experimenting with different scenarios over the weekend.
Seeing the "Unexpected end of ZLIB input stream" every time I try to use the
testing function in conjunction with a 1.6 database. It appears to be falling over at the
import test data section of the process and therefore never reaches the import modules
part.
If I try using the testing function from a database that has been upgraded to
1.9 then I get the following issues when trying to import my modules. Zipped up
my modules folder (currently we run about 29 modules in production) and it is
16.3MB.
ERROR - TestInstallUtil.addZippedTestModules(172) |2012-01-22 14:10:08,747| An
error occured while copying modules to the test system:
java.util.zip.ZipException: error in opening zip file
at java.util.zip.ZipFile.open(Native Method)
at java.util.zip.ZipFile.<init>(ZipFile.java:127)
at java.util.zip.ZipFile.<init>(ZipFile.java:144)
at
org.openmrs.web.filter.initialization.TestInstallUtil.addZippedTestModules(TestInstallUtil.java:144)
at
org.openmrs.web.filter.initialization.InitializationFilter$InitializationCompletion$1.run(InitializationFilter.java:1490)
at java.lang.Thread.run(Thread.java:680)
Jan 22, 2012 5:23:31 PM org.apache.coyote.http11.Http11Protocol destroy
INFO: Stopping Coyote HTTP/1.1 on http-8082
Jan 22, 2012 5:23:31 PM org.apache.catalina.core.StandardContext listenerStop
SEVERE: Exception sending context destroyed event to listener instance of class
org.openmrs.web.Listener
org.openmrs.api.APIException: contextDAO is null
at org.openmrs.api.context.Context.getContextDAO(Context.java:171)
at org.openmrs.api.context.Context.closeSession(Context.java:722)
at org.openmrs.web.Listener.contextDestroyed(Listener.java:497)
at
org.apache.catalina.core.StandardContext.listenerStop(StandardContext.java:4011)
at
org.apache.catalina.core.StandardContext.stop(StandardContext.java:4615)
at org.apache.catalina.core.ContainerBase.stop(ContainerBase.java:1098)
at org.apache.catalina.core.ContainerBase.stop(ContainerBase.java:1098)
at org.apache.catalina.core.StandardEngine.stop(StandardEngine.java:448)
at org.apache.catalina.startup.Embedded.stop(Embedded.java:867)
at org.openmrs.standalone.TomcatManager.stop(TomcatManager.java:86)
at
org.openmrs.standalone.ApplicationController.stopServer(ApplicationController.java:395)
at
org.openmrs.standalone.ApplicationController.access$500(ApplicationController.java:29)
at
org.openmrs.standalone.ApplicationController$2.construct(ApplicationController.java:158)
at org.openmrs.standalone.SwingWorker$2.run(SwingWorker.java:125)
at java.lang.Thread.run(Thread.java:680)
[MysqldResource] stopping mysqld (process: 18576)
[MysqldResource] shutdown complete
________________________________________
From: [email protected] [[email protected]] On Behalf Of Darius Jazayeri
[[email protected]]
Sent: Friday, January 20, 2012 6:32 PM
To: [email protected]
Subject: Re: [OPENMRS-DEV] 1.9.1 Beta standalone and Release Testing Helper
We should track down why the regular testing process didn't work for Lara.
Maybe too many modules so the zip got too big?
Lara, can you manually zip your modules folder and let us know how big it is?
-Darius (by phone)
On Jan 20, 2012 9:18 AM, "Wyclif
Luyima"<[email protected]<mailto:[email protected]>> wrote:
So you are succeeding in loading the imported sql script but the liquibase
upgrade from 1.6 to 1.9 is failing, right?
It would good if you could find out which changeset is failing.
Wyclif
On Fri, Jan 20, 2012 at 3:12 AM, Lara
Kellett<[email protected]<mailto:[email protected]>> wrote:
Hi Wyclif,
Okay I tried trashing everything and starting again. The test install is still
failing, I was trying to import from my local dev environment so internet
connection is not going to be the issue given it is going from localhost to
localhost.
With a clean standalone install I am now able to connect directly to my dev
database (which you can do through the advanced setup option by changing the
connection details). The Migration scripts are still failing going from 1.6 to
1.9 but expected that anyway and at least now I am getting sql errors so can
start working my way through those.
Thanks,
Lara
________________________________________
From: [email protected]<mailto:[email protected]>
[[email protected]<mailto:[email protected]>] On Behalf Of Wyclif Luyima
[[email protected]<mailto:[email protected]>]
Sent: Thursday, January 19, 2012 11:11 PM
To:
[email protected]<mailto:[email protected]>
Subject: Re: [OPENMRS-DEV] 1.9.1 Beta standalone and Release Testing Helper
Hi Lara,
First of all you cannot select advanced option and try to connect to an
existing database at the same time, i wonder how you are managing to do it. If
you attempt to do a test install and it fails, i would suggest you stop the
standalone and clear the database directory in the root of the standalone. FYI
the embedded MySQL instance could have stayed running, kill it before trying
again if this is the case.
Off the top of my head, the cause of the failure could be because the zipped
temp sql dump file is not downloaded fully from your remote system hence
failing to read its contents. How good is your internet connection?
Wyclif
On Thu, Jan 19, 2012 at 9:32 AM, Lara
Kellett<[email protected]<mailto:[email protected]><mailto:[email protected]<mailto:[email protected]>>>
wrote:
Hi,
I am trying to use the 1.9.1 Beta standalone in conjunction with the Release
Testing Module.
I am trying to import the database from my local dev environment which is
running a custom build of 1.6.4 (Build 18038). My dev database is a
de-identified database from our production servers which are also on the same
1.6.4 build.
When I try to import test data into the standalone I am seeing the following
error in the tomcat logs
WARN - InitializationFilter$InitializationCompletion$1.run(1507) |2012-01-19
15<tel:2012-01-19%2015>:56:08,844| Error while trying to import test data
java.io.EOFException: Unexpected end of ZLIB input stream
at java.util.zip.InflaterInputStream.fill(InflaterInputStream.java:223)
at java.util.zip.InflaterInputStream.read(InflaterInputStream.java:141)
at java.util.zip.ZipInputStream.read(ZipInputStream.java:154)
at java.io.FilterInputStream.read(FilterInputStream.java:90)
at org.apache.commons.io.IOUtils.copyLarge(IOUtils.java:1025)
at org.apache.commons.io.IOUtils.copy(IOUtils.java:999)
at
org.openmrs.web.filter.initialization.InitializationFilter.importTestDataSet(InitializationFilter.java:1025)
at
org.openmrs.web.filter.initialization.InitializationFilter.access$400(InitializationFilter.java:87)
at
org.openmrs.web.filter.initialization.InitializationFilter$InitializationCompletion$1.run(InitializationFilter.java:1454)
at java.lang.Thread.run(Thread.java:680)
Does anyone have any suggestions as to the cause of the problem or where I can
start looking? I am seeing the same problems if I try the advanced option and
try to connect the standalone directly to my dev database.
Thanks,
Lara
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