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https://issues.apache.org/jira/browse/PDFBOX-2440?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=14259001#comment-14259001
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Tilman Hausherr edited comment on PDFBOX-2440 at 12/26/14 9:05 AM:
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Sorry, but this doesn't work for many files: saved files are now corrupt and 
can't be reopened by PDFBox or by Adobe Reader. I'll add an example and will 
commit the modification I made here to test this.
{code}
SCHWERWIEGEND: Error converting file asy-functionshading.pdf
java.lang.NullPointerException
        at 
org.apache.pdfbox.pdfparser.PDFXrefStreamParser.parse(PDFXrefStreamParser.java:91)
        at 
org.apache.pdfbox.pdfparser.PDFParser.parseXrefStream(PDFParser.java:900)
        at 
org.apache.pdfbox.pdfparser.NonSequentialPDFParser.parseXrefObjStream(NonSequentialPDFParser.java:749)
        at 
org.apache.pdfbox.pdfparser.NonSequentialPDFParser.parseXref(NonSequentialPDFParser.java:711)
        at 
org.apache.pdfbox.pdfparser.NonSequentialPDFParser.initialParse(NonSequentialPDFParser.java:480)
        at 
org.apache.pdfbox.pdfparser.NonSequentialPDFParser.parse(NonSequentialPDFParser.java:956)
        at org.apache.pdfbox.pdmodel.PDDocument.load(PDDocument.java:941)
        at org.apache.pdfbox.pdmodel.PDDocument.load(PDDocument.java:887)
{code}


was (Author: tilman):
Sorry, but this doesn't work for many files: saved files are now corrupt and 
can't be reopened by PDFBox or by Adobe Reader. I'll add an example and will 
commit the modification I made here to test this.

> xref stream is saved as table
> -----------------------------
>
>                 Key: PDFBOX-2440
>                 URL: https://issues.apache.org/jira/browse/PDFBOX-2440
>             Project: PDFBox
>          Issue Type: Improvement
>          Components: Writing
>    Affects Versions: 1.8.7
>            Reporter: WB
>            Assignee: Andreas Lehmkühler
>             Fix For: 2.0.0
>
>         Attachments: COSWriter.diff, asy-functionshading.pdf, lipsum.pdf, 
> pdfbox4177349906426869579.pdf
>
>
> When saving a PDDocument, PdfBox seems to always write an xref table, even 
> when the original file contains an xref stream.
> To reproduce, load a PDF file (like the one attached) with PDDocument#load 
> (or PDDocument#loadNonSeq, same result) and then save it with PDDocument#save 
> to another file.
> It seems to me that the problem is in COSWriter#doWriteXRef. When 
> COSDocument#isXRefStream is true, the xref entries should be wrapped in a 
> stream, but they're written to output one by one. I think that part should 
> look more like its counterpart in COSWriter#doWriteXRefInc.
> I made some changes to doWriteXRef accordingly and it seems to work for PDFs 
> that have never been incrementally updated but leads to corrupt files when 
> the PDF has been incrementally updated before :(



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