ok, i do have that pesky flag, i didn't see it due to symlink pointing to older perl. i've applied your patch to Makefile.PL, and a change to Apache::ExtUtils that'll have the same effect as your apaci/mod_perl.config.sh patch. i'm certain this flag is not required for modperl+apache-1.3.x, as we don't call any of the functions who's prototypes would change and apache-1.3.x isn't multithreaded on linux anyhow.
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