[
https://issues.apache.org/jira/browse/SINGA-441?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]
thao p nguyen resolved SINGA-441.
---------------------------------
Resolution: Fixed
> can not build CPU version of SINGA on python 3.6
> ------------------------------------------------
>
> Key: SINGA-441
> URL: https://issues.apache.org/jira/browse/SINGA-441
> Project: Singa
> Issue Type: Bug
> Components: Documentation
> Environment: - ubuntu 18
> - python 3.6.7
> Reporter: thao p nguyen
> Priority: Critical
>
> After installed miniconda and conda-build successfully, can not install Singa
> on both python3.6 & 3.7. Below are my command lines and messages:
> thao@thao-OptiPlex-5060:~$ conda list
> WARNING: The conda.compat module is deprecated and will be removed in a
> future release.
> # packages in environment at /home/thao/miniconda3:
> #
> # Name Version Build Channel
> asn1crypto 0.24.0 py37_0
> beautifulsoup4 4.7.1 py37_1
> bzip2 1.0.6 h14c3975_5
> ca-certificates 2019.1.23 0
> certifi 2019.3.9 py37_0
> cffi 1.11.5 py37he75722e_1
> chardet 3.0.4 py37_1
> conda 4.6.11 py37_0
> conda-build 3.17.8 py37_0
> conda-env 2.6.0 1
> cryptography 2.4.2 py37h1ba5d50_0
> filelock 3.0.10 py37_0
> glob2 0.6 py37_1
> icu 58.2 h9c2bf20_1
> idna 2.8 py37_0
> jinja2 2.10 py37_0
> libarchive 3.3.3 h5d8350f_5
> libedit 3.1.20170329 h6b74fdf_2
> libffi 3.2.1 hd88cf55_4
> libgcc-ng 8.2.0 hdf63c60_1
> liblief 0.9.0 h7725739_2
> libstdcxx-ng 8.2.0 hdf63c60_1
> libxml2 2.9.9 he19cac6_0
> lz4-c 1.8.1.2 h14c3975_0
> lzo 2.10 h49e0be7_2
> markupsafe 1.1.1 py37h7b6447c_0
> ncurses 6.1 he6710b0_1
> openssl 1.1.1b h7b6447c_1
> patchelf 0.9 he6710b0_3
> pip 18.1 py37_0
> pkginfo 1.5.0.1 py37_0
> psutil 5.6.1 py37h7b6447c_0
> py-lief 0.9.0 py37h7725739_2
> pycosat 0.6.3 py37h14c3975_0
> pycparser 2.19 py37_0
> pyopenssl 18.0.0 py37_0
> pysocks 1.6.8 py37_0
> python 3.7.1 h0371630_7
> python-libarchive-c 2.8 py37_6
> pytz 2018.9 py37_0
> pyyaml 5.1 py37h7b6447c_0
> readline 7.0 h7b6447c_5
> requests 2.21.0 py37_0
> ruamel_yaml 0.15.46 py37h14c3975_0
> setuptools 40.6.3 py37_0
> six 1.12.0 py37_0
> soupsieve 1.8 py37_0
> sqlite 3.26.0 h7b6447c_0
> tk 8.6.8 hbc83047_0
> tqdm 4.31.1 py37_1
> urllib3 1.24.1 py37_0
> wheel 0.32.3 py37_0
> xz 5.2.4 h14c3975_4
> yaml 0.1.7 had09818_2
> zlib 1.2.11 h7b6447c_3
> zstd 1.3.7 h0b5b093_0
> thao@thao-OptiPlex-5060:~$ conda install conda-build
> WARNING: The conda.compat module is deprecated and will be removed in a
> future release.
> Collecting package metadata: done
> Solving environment: done
> # All requested packages already installed.
> thao@thao-OptiPlex-5060:~$ cd Documents/Singa/incubator-singa/
> thao@thao-OptiPlex-5060:~/Documents/Singa/incubator-singa$ export
> BUILD_STR=cpu
> thao@thao-OptiPlex-5060:~/Documents/Singa/incubator-singa$ conda build
> tool/conda/singa/ --python 3.7
> WARNING: The conda.compat module is deprecated and will be removed in a
> future release.
> No numpy version specified in conda_build_config.yaml. Falling back to
> default numpy value of 1.11
> WARNING:conda_build.metadata:No numpy version specified in
> conda_build_config.yaml. Falling back to default numpy value of 1.11
> Cloning into '/home/thao/miniconda3/conda-bld/singa_1554907178635/work'...
> done.
> checkout: 'HEAD'
> Your branch is up to date with 'origin/_conda_cache_origin_head'.
> Submodule 'rafiki' (https://github.com/nginyc/rafiki.git) registered for path
> 'rafiki'
> Cloning into
> '/home/thao/miniconda3/conda-bld/singa_1554907178635/work/rafiki'...
> Submodule path 'rafiki': checked out
> 'b027c588f27ed4e801e8e300785b0eca230b5167'
> ==> git log -n1 <==
> commit 5f14f3dbc005a64fdbc508bff63db92e6d3e05b6
> Merge: 8072ecdb 73a3b471
> Author: Wang Wei <[email protected]>
> Date: Sun Apr 7 13:11:35 2019 +0800
> Merge branch 'master' of https://gitbox.apache.org/repos/asf/incubator-singa
> ==> git describe --tags --dirty <==
> 2.0.0rc1
> ==> git status <==
> On branch _conda_cache_origin_head
> Your branch is up to date with 'origin/_conda_cache_origin_head'.
> nothing to commit, working tree clean
> Adding in variants from internal_defaults
> INFO:conda_build.variants:Adding in variants from internal_defaults
> Adding in variants from
> /home/thao/Documents/Singa/incubator-singa/tool/conda/singa/conda_build_config.yaml
> INFO:conda_build.variants:Adding in variants from
> /home/thao/Documents/Singa/incubator-singa/tool/conda/singa/conda_build_config.yaml
> Adding in variants from config.variant
> INFO:conda_build.variants:Adding in variants from config.variant
> /home/thao/miniconda3/lib/python3.7/site-packages/conda_build/environ.py:414:
> UserWarning: The environment variable 'CUDA' is undefined.
> UserWarning
> Attempting to finalize metadata for singa
> INFO:conda_build.metadata:Attempting to finalize metadata for singa
> Collecting package metadata: ...working... done
> Solving environment: ...working... done
> Collecting package metadata: ...working... done
> Solving environment: ...working... done
> Collecting package metadata: ...working... done
> Solving environment: ...working... done
> Collecting package metadata: ...working... done
> Solving environment: ...working... done
> BUILD START: ['singa-2.0.0rc1-cpu.tar.bz2']
> Collecting package metadata: ...working... done
> Solving environment: ...working... done
> ## Package Plan ##
> environment location:
> /home/thao/miniconda3/conda-bld/singa_1554907178635/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh
> The following NEW packages will be INSTALLED:
> blas: 1.0-openblas
> ca-certificates: 2019.1.23-0
> certifi: 2019.3.9-py36_0
> gflags: 2.2.2-he6710b0_0
> glog: 0.3.5-hf484d3e_1
> intel-openmp: 2018.0.3-0
> libedit: 3.1.20181209-hc058e9b_0
> libffi: 3.2.1-hd88cf55_4
> libgcc-ng: 8.2.0-hdf63c60_1
> libgfortran-ng: 7.3.0-hdf63c60_0
> libmklml: 2018.0.3-0
> libopenblas: 0.3.3-h5a2b251_3
> libprotobuf: 3.4.0-0
> libstdcxx-ng: 8.2.0-hdf63c60_1
> mkl-dnn: 0.14-h6bb024c_0
> ncurses: 6.1-he6710b0_1
> nomkl: 3.0-0
> numpy: 1.16.0-py36h99e49ec_1
> numpy-base: 1.16.0-py36h2f8d375_1
> openblas: 0.3.3-3
> openblas-devel: 0.3.3-3
> openssl: 1.1.1b-h7b6447c_1
> pcre: 8.43-he6710b0_0
> pip: 19.0.3-py36_0
> protobuf: 3.4.0-py36_0
> python: 3.6.8-h0371630_0
> readline: 7.0-h7b6447c_5
> setuptools: 40.8.0-py36_0
> six: 1.12.0-py36_0
> sqlite: 3.27.2-h7b6447c_0
> swig: 3.0.12-h38cdd7d_3
> tk: 8.6.8-hbc83047_0
> wheel: 0.33.1-py36_0
> xz: 5.2.4-h14c3975_4
> zlib: 1.2.11-h7b6447c_3
> Preparing transaction: ...working... done
> Verifying transaction: ...working... done
> Executing transaction: ...working... done
> WARNING: symlink_conda() is deprecated.
> Collecting package metadata: ...working... done
> Solving environment: ...working... done
> Collecting package metadata: ...working... done
> Solving environment: ...working... failed
> Leaving build/test directories:
> Work:
> /home/thao/miniconda3/conda-bld/work
> Test:
> /home/thao/miniconda3/conda-bld/test_tmp
> Leaving build/test environments:
> Test:
> source activate
> /home/thao/miniconda3/conda-bld/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla
>
> Build:
> source activate /home/thao/miniconda3/conda-bld/_build_env
> Traceback (most recent call last):
> File
> "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/environ.py",
> line 753, in get_install_actions
> actions = install_actions(prefix, index, specs, force=True)
> File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/common/io.py",
> line 88, in decorated
> return f(*args, **kwds)
> File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/plan.py", line
> 473, in install_actions
> txn = solver.solve_for_transaction(prune=prune, ignore_pinned=not pinned)
> File
> "/home/thao/miniconda3/lib/python3.7/site-packages/conda/core/solve.py", line
> 107, in solve_for_transaction
> force_remove, force_reinstall)
> File
> "/home/thao/miniconda3/lib/python3.7/site-packages/conda/core/solve.py", line
> 145, in solve_for_diff
> force_remove)
> File
> "/home/thao/miniconda3/lib/python3.7/site-packages/conda/core/solve.py", line
> 242, in solve_final_state
> ssc = self._run_sat(ssc)
> File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/common/io.py",
> line 88, in decorated
> return f(*args, **kwds)
> File
> "/home/thao/miniconda3/lib/python3.7/site-packages/conda/core/solve.py", line
> 475, in _run_sat
> conflicting_specs =
> ssc.r.get_conflicting_specs(tuple(final_environment_specs))
> File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/resolve.py",
> line 852, in get_conflicting_specs
> reduced_index = self.get_reduced_index(specs)
> File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/common/io.py",
> line 88, in decorated
> return f(*args, **kwds)
> File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/resolve.py",
> line 356, in get_reduced_index
> specs, features = self.verify_specs(specs)
> File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/resolve.py",
> line 244, in verify_specs
> raise ResolvePackageNotFound(bad_deps)
> conda.exceptions.ResolvePackageNotFound:
> - onnx[version='>=1.3.0']
> During handling of the above exception, another exception occurred:
> Traceback (most recent call last):
> File "/home/thao/miniconda3/bin/conda-build", line 11, in <module>
> sys.exit(main())
> File
> "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/cli/main_build.py",
> line 456, in main
> execute(sys.argv[1:])
> File
> "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/cli/main_build.py",
> line 447, in execute
> verify=args.verify, variants=args.variants)
> File "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/api.py",
> line 208, in build
> notest=notest, need_source_download=need_source_download, variants=variants)
> File
> "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/build.py",
> line 2314, in build_tree
> notest=notest,
> File
> "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/build.py",
> line 1397, in build
> create_build_envs(m, notest)
> File
> "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/build.py",
> line 1281, in create_build_envs
> raise e
> File
> "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/build.py",
> line 1271, in create_build_envs
> channel_urls=tuple(m.config.channel_urls))
> File
> "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/environ.py",
> line 755, in get_install_actions
> raise DependencyNeedsBuildingError(exc, subdir=subdir)
> conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable
> dependencies for platform linux-64: \{"onnx[version='>=1.3.0']"}
> thao@thao-OptiPlex-5060:~/Documents/Singa/incubator-singa$ conda build
> tool/conda/singa/ --python 3.6
> WARNING: The conda.compat module is deprecated and will be removed in a
> future release.
> No numpy version specified in conda_build_config.yaml. Falling back to
> default numpy value of 1.11
> WARNING:conda_build.metadata:No numpy version specified in
> conda_build_config.yaml. Falling back to default numpy value of 1.11
> Cloning into '/home/thao/miniconda3/conda-bld/singa_1554947642062/work'...
> done.
> checkout: 'HEAD'
> Your branch is up to date with 'origin/_conda_cache_origin_head'.
> Submodule 'rafiki' (https://github.com/nginyc/rafiki.git) registered for path
> 'rafiki'
> Cloning into
> '/home/thao/miniconda3/conda-bld/singa_1554947642062/work/rafiki'...
> Submodule path 'rafiki': checked out
> 'b027c588f27ed4e801e8e300785b0eca230b5167'
> ==> git log -n1 <==
> commit 5f14f3dbc005a64fdbc508bff63db92e6d3e05b6
> Merge: 8072ecdb 73a3b471
> Author: Wang Wei <[email protected]>
> Date: Sun Apr 7 13:11:35 2019 +0800
> Merge branch 'master' of https://gitbox.apache.org/repos/asf/incubator-singa
> ==> git describe --tags --dirty <==
> 2.0.0rc1
> ==> git status <==
> On branch _conda_cache_origin_head
> Your branch is up to date with 'origin/_conda_cache_origin_head'.
> nothing to commit, working tree clean
> Adding in variants from internal_defaults
> INFO:conda_build.variants:Adding in variants from internal_defaults
> Adding in variants from
> /home/thao/Documents/Singa/incubator-singa/tool/conda/singa/conda_build_config.yaml
> INFO:conda_build.variants:Adding in variants from
> /home/thao/Documents/Singa/incubator-singa/tool/conda/singa/conda_build_config.yaml
> Adding in variants from config.variant
> INFO:conda_build.variants:Adding in variants from config.variant
> /home/thao/miniconda3/lib/python3.7/site-packages/conda_build/environ.py:414:
> UserWarning: The environment variable 'CUDA' is undefined.
> UserWarning
> Attempting to finalize metadata for singa
> INFO:conda_build.metadata:Attempting to finalize metadata for singa
> Collecting package metadata: ...working... done
> Solving environment: ...working... done
> Collecting package metadata: ...working... done
> Solving environment: ...working... done
> Collecting package metadata: ...working... done
> Solving environment: ...working... done
> Collecting package metadata: ...working... done
> Solving environment: ...working... done
> BUILD START: ['singa-2.0.0rc1-cpu.tar.bz2']
> Collecting package metadata: ...working... done
> Solving environment: ...working... done
> ## Package Plan ##
> environment location:
> /home/thao/miniconda3/conda-bld/singa_1554947642062/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh
> The following NEW packages will be INSTALLED:
> blas: 1.0-openblas
> ca-certificates: 2019.1.23-0
> certifi: 2019.3.9-py36_0
> gflags: 2.2.2-he6710b0_0
> glog: 0.3.5-hf484d3e_1
> intel-openmp: 2018.0.3-0
> libedit: 3.1.20181209-hc058e9b_0
> libffi: 3.2.1-hd88cf55_4
> libgcc-ng: 8.2.0-hdf63c60_1
> libgfortran-ng: 7.3.0-hdf63c60_0
> libmklml: 2018.0.3-0
> libopenblas: 0.3.3-h5a2b251_3
> libprotobuf: 3.4.0-0
> libstdcxx-ng: 8.2.0-hdf63c60_1
> mkl-dnn: 0.14-h6bb024c_0
> ncurses: 6.1-he6710b0_1
> nomkl: 3.0-0
> numpy: 1.16.0-py36h99e49ec_1
> numpy-base: 1.16.0-py36h2f8d375_1
> openblas: 0.3.3-3
> openblas-devel: 0.3.3-3
> openssl: 1.1.1b-h7b6447c_1
> pcre: 8.43-he6710b0_0
> pip: 19.0.3-py36_0
> protobuf: 3.4.0-py36_0
> python: 3.6.8-h0371630_0
> readline: 7.0-h7b6447c_5
> setuptools: 40.8.0-py36_0
> six: 1.12.0-py36_0
> sqlite: 3.27.2-h7b6447c_0
> swig: 3.0.12-h38cdd7d_3
> tk: 8.6.8-hbc83047_0
> wheel: 0.33.1-py36_0
> xz: 5.2.4-h14c3975_4
> zlib: 1.2.11-h7b6447c_3
> Preparing transaction: ...working... done
> Verifying transaction: ...working... done
> Executing transaction: ...working... done
> WARNING: symlink_conda() is deprecated.
> Collecting package metadata: ...working... done
> Solving environment: ...working... done
> Collecting package metadata: ...working... done
> Solving environment: ...working... failed
> Leaving build/test directories:
> Work:
> /home/thao/miniconda3/conda-bld/work
> Test:
> /home/thao/miniconda3/conda-bld/test_tmp
> Leaving build/test environments:
> Test:
> source activate
> /home/thao/miniconda3/conda-bld/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla
>
> Build:
> source activate /home/thao/miniconda3/conda-bld/_build_env
> Traceback (most recent call last):
> File
> "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/environ.py",
> line 753, in get_install_actions
> actions = install_actions(prefix, index, specs, force=True)
> File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/common/io.py",
> line 88, in decorated
> return f(*args, **kwds)
> File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/plan.py", line
> 473, in install_actions
> txn = solver.solve_for_transaction(prune=prune, ignore_pinned=not pinned)
> File
> "/home/thao/miniconda3/lib/python3.7/site-packages/conda/core/solve.py", line
> 107, in solve_for_transaction
> force_remove, force_reinstall)
> File
> "/home/thao/miniconda3/lib/python3.7/site-packages/conda/core/solve.py", line
> 145, in solve_for_diff
> force_remove)
> File
> "/home/thao/miniconda3/lib/python3.7/site-packages/conda/core/solve.py", line
> 242, in solve_final_state
> ssc = self._run_sat(ssc)
> File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/common/io.py",
> line 88, in decorated
> return f(*args, **kwds)
> File
> "/home/thao/miniconda3/lib/python3.7/site-packages/conda/core/solve.py", line
> 475, in _run_sat
> conflicting_specs =
> ssc.r.get_conflicting_specs(tuple(final_environment_specs))
> File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/resolve.py",
> line 852, in get_conflicting_specs
> reduced_index = self.get_reduced_index(specs)
> File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/common/io.py",
> line 88, in decorated
> return f(*args, **kwds)
> File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/resolve.py",
> line 356, in get_reduced_index
> specs, features = self.verify_specs(specs)
> File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/resolve.py",
> line 244, in verify_specs
> raise ResolvePackageNotFound(bad_deps)
> conda.exceptions.ResolvePackageNotFound:
> - onnx[version='>=1.3.0']
> During handling of the above exception, another exception occurred:
> Traceback (most recent call last):
> File "/home/thao/miniconda3/bin/conda-build", line 11, in <module>
> sys.exit(main())
> File
> "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/cli/main_build.py",
> line 456, in main
> execute(sys.argv[1:])
> File
> "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/cli/main_build.py",
> line 447, in execute
> verify=args.verify, variants=args.variants)
> File "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/api.py",
> line 208, in build
> notest=notest, need_source_download=need_source_download, variants=variants)
> File
> "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/build.py",
> line 2314, in build_tree
> notest=notest,
> File
> "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/build.py",
> line 1397, in build
> create_build_envs(m, notest)
> File
> "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/build.py",
> line 1281, in create_build_envs
> raise e
> File
> "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/build.py",
> line 1271, in create_build_envs
> channel_urls=tuple(m.config.channel_urls))
> File
> "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/environ.py",
> line 755, in get_install_actions
> raise DependencyNeedsBuildingError(exc, subdir=subdir)
> conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable
> dependencies for platform linux-64: \{"onnx[version='>=1.3.0']"}
--
This message was sent by Atlassian JIRA
(v7.6.3#76005)
