Andrew and Gary, Would you guys be able to test https://github.com/apache/spark/pull/1409/files and see if it solves your problem?
- Patrick On Mon, Jul 14, 2014 at 4:18 PM, Andrew Ash <and...@andrewash.com> wrote: > I observed a deadlock here when using the AvroInputFormat as well. The > short of the issue is that there's one configuration object per JVM, but > multiple threads, one for each task. If each thread attempts to add a > configuration option to the Configuration object at once you get issues > because HashMap isn't thread safe. > > More details to come tonight. Thanks! > On Jul 14, 2014 4:11 PM, "Nishkam Ravi" <nr...@cloudera.com> wrote: > >> HI Patrick, I'm not aware of another place where the access happens, but >> it's possible that it does. The original fix synchronized on the >> broadcastConf object and someone reported the same exception. >> >> >> On Mon, Jul 14, 2014 at 3:57 PM, Patrick Wendell <pwend...@gmail.com> >> wrote: >> >> > Hey Nishkam, >> > >> > Aaron's fix should prevent two concurrent accesses to getJobConf (and >> > the Hadoop code therein). But if there is code elsewhere that tries to >> > mutate the configuration, then I could see how we might still have the >> > ConcurrentModificationException. >> > >> > I looked at your patch for HADOOP-10456 and the only example you give >> > is of the data being accessed inside of getJobConf. Is it accessed >> > somewhere else too from Spark that you are aware of? >> > >> > https://issues.apache.org/jira/browse/HADOOP-10456 >> > >> > - Patrick >> > >> > On Mon, Jul 14, 2014 at 3:28 PM, Nishkam Ravi <nr...@cloudera.com> >> wrote: >> > > Hi Aaron, I'm not sure if synchronizing on an arbitrary lock object >> would >> > > help. I suspect we will start seeing the >> ConcurrentModificationException >> > > again. The right fix has gone into Hadoop through 10456. >> Unfortunately, I >> > > don't have any bright ideas on how to synchronize this at the Spark >> level >> > > without the risk of deadlocks. >> > > >> > > >> > > On Mon, Jul 14, 2014 at 3:07 PM, Aaron Davidson <ilike...@gmail.com> >> > wrote: >> > > >> > >> The full jstack would still be useful, but our current working theory >> is >> > >> that this is due to the fact that Configuration#loadDefaults goes >> > through >> > >> every Configuration object that was ever created (via >> > >> Configuration.REGISTRY) and locks it, thus introducing a dependency >> from >> > >> new Configuration to old, otherwise unrelated, Configuration objects >> > that >> > >> our locking did not anticipate. >> > >> >> > >> I have created https://github.com/apache/spark/pull/1409 to hopefully >> > fix >> > >> this bug. >> > >> >> > >> >> > >> On Mon, Jul 14, 2014 at 2:44 PM, Patrick Wendell <pwend...@gmail.com> >> > >> wrote: >> > >> >> > >> > Hey Cody, >> > >> > >> > >> > This Jstack seems truncated, would you mind giving the entire stack >> > >> > trace? For the second thread, for instance, we can't see where the >> > >> > lock is being acquired. >> > >> > >> > >> > - Patrick >> > >> > >> > >> > On Mon, Jul 14, 2014 at 1:42 PM, Cody Koeninger >> > >> > <cody.koenin...@mediacrossing.com> wrote: >> > >> > > Hi all, just wanted to give a heads up that we're seeing a >> > reproducible >> > >> > > deadlock with spark 1.0.1 with 2.3.0-mr1-cdh5.0.2 >> > >> > > >> > >> > > If jira is a better place for this, apologies in advance - figured >> > >> > talking >> > >> > > about it on the mailing list was friendlier than randomly >> > (re)opening >> > >> > jira >> > >> > > tickets. >> > >> > > >> > >> > > I know Gary had mentioned some issues with 1.0.1 on the mailing >> > list, >> > >> > once >> > >> > > we got a thread dump I wanted to follow up. >> > >> > > >> > >> > > The thread dump shows the deadlock occurs in the synchronized >> block >> > of >> > >> > code >> > >> > > that was changed in HadoopRDD.scala, for the Spark-1097 issue >> > >> > > >> > >> > > Relevant portions of the thread dump are summarized below, we can >> > >> provide >> > >> > > the whole dump if it's useful. >> > >> > > >> > >> > > Found one Java-level deadlock: >> > >> > > ============================= >> > >> > > "Executor task launch worker-1": >> > >> > > waiting to lock monitor 0x00007f250400c520 (object >> > >> 0x00000000fae7dc30, >> > >> > a >> > >> > > org.apache.hadoop.co >> > >> > > nf.Configuration), >> > >> > > which is held by "Executor task launch worker-0" >> > >> > > "Executor task launch worker-0": >> > >> > > waiting to lock monitor 0x00007f2520495620 (object >> > >> 0x00000000faeb4fc8, >> > >> > a >> > >> > > java.lang.Class), >> > >> > > which is held by "Executor task launch worker-1" >> > >> > > >> > >> > > >> > >> > > "Executor task launch worker-1": >> > >> > > at >> > >> > > >> > >> > >> > >> >> > >> org.apache.hadoop.conf.Configuration.reloadConfiguration(Configuration.java:791) >> > >> > > - waiting to lock <0x00000000fae7dc30> (a >> > >> > > org.apache.hadoop.conf.Configuration) >> > >> > > at >> > >> > > >> > >> > >> > >> >> > >> org.apache.hadoop.conf.Configuration.addDefaultResource(Configuration.java:690) >> > >> > > - locked <0x00000000faca6ff8> (a java.lang.Class for >> > >> > > org.apache.hadoop.conf.Configurati >> > >> > > on) >> > >> > > at >> > >> > > >> > >> > >> > >> >> > >> org.apache.hadoop.hdfs.HdfsConfiguration.<clinit>(HdfsConfiguration.java:34) >> > >> > > at >> > >> > > >> > >> > >> > >> >> > >> org.apache.hadoop.hdfs.DistributedFileSystem.<clinit>(DistributedFileSystem.java:110 >> > >> > > ) >> > >> > > at >> > >> sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native >> > >> > > Method) >> > >> > > at >> > >> > > >> > >> > >> > >> >> > >> sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl. >> > >> > > java:57) >> > >> > > at >> > >> sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native >> > >> > > Method) >> > >> > > at >> > >> > > >> > >> > >> > >> >> > >> sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl. >> > >> > > java:57) >> > >> > > at >> > >> > > >> > >> > >> > >> >> > >> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAcces >> > >> > > sorImpl.java:45) >> > >> > > at >> > >> > java.lang.reflect.Constructor.newInstance(Constructor.java:525) >> > >> > > at java.lang.Class.newInstance0(Class.java:374) >> > >> > > at java.lang.Class.newInstance(Class.java:327) >> > >> > > at >> > >> > java.util.ServiceLoader$LazyIterator.next(ServiceLoader.java:373) >> > >> > > at java.util.ServiceLoader$1.next(ServiceLoader.java:445) >> > >> > > at >> > >> > > >> > org.apache.hadoop.fs.FileSystem.loadFileSystems(FileSystem.java:2364) >> > >> > > - locked <0x00000000faeb4fc8> (a java.lang.Class for >> > >> > > org.apache.hadoop.fs.FileSystem) >> > >> > > at >> > >> > > >> > >> >> org.apache.hadoop.fs.FileSystem.getFileSystemClass(FileSystem.java:2375) >> > >> > > at >> > >> > > >> > org.apache.hadoop.fs.FileSystem.createFileSystem(FileSystem.java:2392) >> > >> > > at >> > >> org.apache.hadoop.fs.FileSystem.access$200(FileSystem.java:89) >> > >> > > at >> > >> > > >> > org.apache.hadoop.fs.FileSystem$Cache.getInternal(FileSystem.java:2431) >> > >> > > at >> > >> > org.apache.hadoop.fs.FileSystem$Cache.get(FileSystem.java:2413) >> > >> > > at >> org.apache.hadoop.fs.FileSystem.get(FileSystem.java:368) >> > >> > > at >> org.apache.hadoop.fs.FileSystem.get(FileSystem.java:167) >> > >> > > at >> > >> > > >> > org.apache.hadoop.mapred.JobConf.getWorkingDirectory(JobConf.java:587) >> > >> > > at >> > >> > > >> > >> > >> > >> >> > >> org.apache.hadoop.mapred.FileInputFormat.setInputPaths(FileInputFormat.java:315) >> > >> > > at >> > >> > > >> > >> > >> > >> >> > >> org.apache.hadoop.mapred.FileInputFormat.setInputPaths(FileInputFormat.java:288) >> > >> > > at >> > >> > > >> > org.apache.spark.SparkContext$$anonfun$22.apply(SparkContext.scala:546) >> > >> > > at >> > >> > > >> > org.apache.spark.SparkContext$$anonfun$22.apply(SparkContext.scala:546) >> > >> > > at >> > >> > > >> > >> > >> > >> >> > >> org.apache.spark.rdd.HadoopRDD$$anonfun$getJobConf$1.apply(HadoopRDD.scala:145) >> > >> > > >> > >> > > >> > >> > > >> > >> > > ...elided... >> > >> > > >> > >> > > >> > >> > > "Executor task launch worker-0" daemon prio=10 >> > tid=0x0000000001e71800 >> > >> > > nid=0x2d97 waiting for monitor entry [0x00007f24d2bf1000] >> > >> > > java.lang.Thread.State: BLOCKED (on object monitor) >> > >> > > at >> > >> > > >> > org.apache.hadoop.fs.FileSystem.loadFileSystems(FileSystem.java:2362) >> > >> > > - waiting to lock <0x00000000faeb4fc8> (a java.lang.Class >> > for >> > >> > > org.apache.hadoop.fs.FileSystem) >> > >> > > at >> > >> > > >> > >> >> org.apache.hadoop.fs.FileSystem.getFileSystemClass(FileSystem.java:2375) >> > >> > > at >> > >> > > >> > org.apache.hadoop.fs.FileSystem.createFileSystem(FileSystem.java:2392) >> > >> > > at >> > >> org.apache.hadoop.fs.FileSystem.access$200(FileSystem.java:89) >> > >> > > at >> > >> > > >> > org.apache.hadoop.fs.FileSystem$Cache.getInternal(FileSystem.java:2431) >> > >> > > at >> > >> > org.apache.hadoop.fs.FileSystem$Cache.get(FileSystem.java:2413) >> > >> > > at >> org.apache.hadoop.fs.FileSystem.get(FileSystem.java:368) >> > >> > > at >> org.apache.hadoop.fs.FileSystem.get(FileSystem.java:167) >> > >> > > at >> > >> > > >> > org.apache.hadoop.mapred.JobConf.getWorkingDirectory(JobConf.java:587) >> > >> > > at >> > >> > > >> > >> > >> > >> >> > >> org.apache.hadoop.mapred.FileInputFormat.setInputPaths(FileInputFormat.java:315) >> > >> > > at >> > >> > > >> > >> > >> > >> >> > >> org.apache.hadoop.mapred.FileInputFormat.setInputPaths(FileInputFormat.java:288) >> > >> > > at >> > >> > > >> > org.apache.spark.SparkContext$$anonfun$22.apply(SparkContext.scala:546) >> > >> > > at >> > >> > > >> > org.apache.spark.SparkContext$$anonfun$22.apply(SparkContext.scala:546) >> > >> > > at >> > >> > > >> > >> > >> > >> >> > >> org.apache.spark.rdd.HadoopRDD$$anonfun$getJobConf$1.apply(HadoopRDD.scala:145) >> > >> > >> > >> >> > >>
