Hi Andrew, It looks like somehow you are including jars from the upstream Apache Hive 0.13 project on your classpath. For Spark 1.2 Hive 0.13 support, we had to modify Hive to use a different version of Kryo that was compatible with Spark's Kryo version.
https://github.com/pwendell/hive/commit/5b582f242946312e353cfce92fc3f3fa472aedf3 I would look through the actual classpath and make sure you aren't including your own hive-exec jar somehow. - Patrick On Wed, Dec 10, 2014 at 9:48 AM, Andrew Lee <alee...@hotmail.com> wrote: > Apologize for the format, somehow it got messed up and linefeed were removed. > Here's a reformatted version. > Hi All, > I tried to include necessary libraries in SPARK_CLASSPATH in spark-env.sh to > include auxiliaries JARs and datanucleus*.jars from Hive, however, when I run > HiveContext, it gives me the following error: > > Caused by: java.lang.ClassNotFoundException: > com.esotericsoftware.shaded.org.objenesis.strategy.InstantiatorStrategy > > I have checked the JARs with (jar tf), looks like this is already included > (shaded) in the assembly JAR (spark-assembly-1.2.0-hadoop2.4.1.jar) which is > configured in the System classpath already. I couldn't figure out what is > going on with the shading on the esotericsoftware JARs here. Any help is > appreciated. > > > How to reproduce the problem? > Run the following 3 statements in spark-shell ( This is how I launched my > spark-shell. cd /opt/spark; ./bin/spark-shell --master yarn --deploy-mode > client --queue research --driver-memory 1024M) > > import org.apache.spark.SparkContext > val hiveContext = new org.apache.spark.sql.hive.HiveContext(sc) > hiveContext.hql("CREATE TABLE IF NOT EXISTS spark_hive_test_table (key INT, > value STRING)") > > > > A reference of my environment. > Apache Hadoop 2.4.1 > Apache Hive 0.13.1 > Apache Spark branch-1.2 (installed under /opt/spark/, and config under > /etc/spark/) > Maven build command: > > mvn -U -X -Phadoop-2.4 -Pyarn -Phive -Phive-0.13.1 -Dhadoop.version=2.4.1 > -Dyarn.version=2.4.1 -Dhive.version=0.13.1 -DskipTests install > > Source Code commit label: eb4d457a870f7a281dc0267db72715cd00245e82 > > My spark-env.sh have the following contents when I executed spark-shell: >> HADOOP_HOME=/opt/hadoop/ >> HIVE_HOME=/opt/hive/ >> HADOOP_CONF_DIR=/etc/hadoop/ >> YARN_CONF_DIR=/etc/hadoop/ >> HIVE_CONF_DIR=/etc/hive/ >> HADOOP_SNAPPY_JAR=$(find $HADOOP_HOME/share/hadoop/common/lib/ -type f -name >> "snappy-java-*.jar") >> HADOOP_LZO_JAR=$(find $HADOOP_HOME/share/hadoop/common/lib/ -type f -name >> "hadoop-lzo-*.jar") >> SPARK_YARN_DIST_FILES=/user/spark/libs/spark-assembly-1.2.0-hadoop2.4.1.jar >> export JAVA_LIBRARY_PATH=$JAVA_LIBRARY_PATH:$HADOOP_HOME/lib/native >> export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$HADOOP_HOME/lib/native >> export SPARK_LIBRARY_PATH=$SPARK_LIBRARY_PATH:$HADOOP_HOME/lib/native >> export >> SPARK_CLASSPATH=$SPARK_CLASSPATH:$HADOOP_SNAPPY_JAR:$HADOOP_LZO_JAR:$HIVE_CONF_DIR:/opt/hive/lib/datanucleus-api-jdo-3.2.6.jar:/opt/hive/lib/datanucleus-core-3.2.10.jar:/opt/hive/lib/datanucleus-rdbms-3.2.9.jar > > >> Here's what I see from my stack trace. >> warning: there were 1 deprecation warning(s); re-run with -deprecation for >> details >> Hive history >> file=/home/hive/log/alti-test-01/hive_job_log_b5db9539-4736-44b3-a601-04fa77cb6730_1220828461.txt >> java.lang.NoClassDefFoundError: >> com/esotericsoftware/shaded/org/objenesis/strategy/InstantiatorStrategy >> at >> org.apache.hadoop.hive.ql.exec.Utilities.<clinit>(Utilities.java:925) >> at >> org.apache.hadoop.hive.ql.parse.SemanticAnalyzer.validate(SemanticAnalyzer.java:9718) >> at >> org.apache.hadoop.hive.ql.parse.SemanticAnalyzer.validate(SemanticAnalyzer.java:9712) >> at org.apache.hadoop.hive.ql.Driver.compile(Driver.java:434) >> at org.apache.hadoop.hive.ql.Driver.compile(Driver.java:322) >> at org.apache.hadoop.hive.ql.Driver.compileInternal(Driver.java:975) >> at org.apache.hadoop.hive.ql.Driver.runInternal(Driver.java:1040) >> at org.apache.hadoop.hive.ql.Driver.run(Driver.java:911) >> at org.apache.hadoop.hive.ql.Driver.run(Driver.java:901) >> at org.apache.spark.sql.hive.HiveContext.runHive(HiveContext.scala:305) >> at >> org.apache.spark.sql.hive.HiveContext.runSqlHive(HiveContext.scala:276) >> at >> org.apache.spark.sql.hive.execution.NativeCommand.sideEffectResult$lzycompute(NativeCommand.scala:35) >> at >> org.apache.spark.sql.hive.execution.NativeCommand.sideEffectResult(NativeCommand.scala:35) >> at >> org.apache.spark.sql.execution.Command$class.execute(commands.scala:46) >> at >> org.apache.spark.sql.hive.execution.NativeCommand.execute(NativeCommand.scala:30) >> at >> org.apache.spark.sql.SQLContext$QueryExecution.toRdd$lzycompute(SQLContext.scala:425) >> at >> org.apache.spark.sql.SQLContext$QueryExecution.toRdd(SQLContext.scala:425) >> at >> org.apache.spark.sql.SchemaRDDLike$class.$init$(SchemaRDDLike.scala:58) >> at org.apache.spark.sql.SchemaRDD.<init>(SchemaRDD.scala:108) >> at org.apache.spark.sql.hive.HiveContext.hiveql(HiveContext.scala:102) >> at org.apache.spark.sql.hive.HiveContext.hql(HiveContext.scala:106) >> at $iwC$$iwC$$iwC$$iwC.<init>(<console>:16) >> at $iwC$$iwC$$iwC.<init>(<console>:21) >> at $iwC$$iwC.<init>(<console>:23) >> at $iwC.<init>(<console>:25) >> at <init>(<console>:27) >> at .<init>(<console>:31) >> at .<clinit>(<console>) >> at .<init>(<console>:7) >> at .<clinit>(<console>) >> at $print(<console>) >> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) >> at >> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) >> at >> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) >> at java.lang.reflect.Method.invoke(Method.java:606) >> at >> org.apache.spark.repl.SparkIMain$ReadEvalPrint.call(SparkIMain.scala:852) >> at >> org.apache.spark.repl.SparkIMain$Request.loadAndRun(SparkIMain.scala:1125) >> at >> org.apache.spark.repl.SparkIMain.loadAndRunReq$1(SparkIMain.scala:674) >> at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:705) >> at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:669) >> at >> org.apache.spark.repl.SparkILoop.reallyInterpret$1(SparkILoop.scala:828) >> at >> org.apache.spark.repl.SparkILoop.interpretStartingWith(SparkILoop.scala:873) >> at org.apache.spark.repl.SparkILoop.command(SparkILoop.scala:785) >> at org.apache.spark.repl.SparkILoop.processLine$1(SparkILoop.scala:628) >> at org.apache.spark.repl.SparkILoop.innerLoop$1(SparkILoop.scala:636) >> at org.apache.spark.repl.SparkILoop.loop(SparkILoop.scala:641) >> at >> org.apache.spark.repl.SparkILoop$$anonfun$process$1.apply$mcZ$sp(SparkILoop.scala:968) >> at >> org.apache.spark.repl.SparkILoop$$anonfun$process$1.apply(SparkILoop.scala:916) >> at >> org.apache.spark.repl.SparkILoop$$anonfun$process$1.apply(SparkILoop.scala:916) >> at >> scala.tools.nsc.util.ScalaClassLoader$.savingContextLoader(ScalaClassLoader.scala:135) >> at org.apache.spark.repl.SparkILoop.process(SparkILoop.scala:916) >> at org.apache.spark.repl.SparkILoop.process(SparkILoop.scala:1011) >> at org.apache.spark.repl.Main$.main(Main.scala:31) >> at org.apache.spark.repl.Main.main(Main.scala) >> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) >> at >> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) >> at >> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) >> at java.lang.reflect.Method.invoke(Method.java:606) >> at org.apache.spark.deploy.SparkSubmit$.launch(SparkSubmit.scala:353) >> at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:75) >> at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala) >> Caused by: java.lang.ClassNotFoundException: >> com.esotericsoftware.shaded.org.objenesis.strategy.InstantiatorStrategy >> at java.net.URLClassLoader$1.run(URLClassLoader.java:366) >> at java.net.URLClassLoader$1.run(URLClassLoader.java:355) >> at java.security.AccessController.doPrivileged(Native Method) >> at java.net.URLClassLoader.findClass(URLClassLoader.java:354) >> at java.lang.ClassLoader.loadClass(ClassLoader.java:425) >> at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308) >> at java.lang.ClassLoader.loadClass(ClassLoader.java:358) >> ... 61 more >> >> > --------------------------------------------------------------------- To unsubscribe, e-mail: dev-unsubscr...@spark.apache.org For additional commands, e-mail: dev-h...@spark.apache.org
