I'm using spark-1.4.0. Sure will try to make steps to reproduce and file
a JIRA ticket.
Thanks,
Peter Rudenko
On 2015-06-26 11:14, Josh Rosen wrote:
Which Spark version are you using? Can you file a JIRA for this issue?
On Thu, Jun 25, 2015 at 6:35 AM, Peter Rudenko
<petro.rude...@gmail.com <mailto:petro.rude...@gmail.com>> wrote:
Hi, i have a small but very wide dataset (2000 columns). Trying to
optimize Dataframe pipeline for it, since it behaves very poorly
comparing to rdd operation.
With spark.sql.codegen=true it throws StackOverflow:
15/06/25 16:27:16 INFO CacheManager: Partition rdd_12_3 not found,
computing it 15/06/25 16:27:16 INFO HadoopRDD: Input split:
file:/home/peter/validation.csv:0+337768 15/06/25 16:27:16 INFO
CacheManager: Partition rdd_12_1 not found, computing it 15/06/25
16:27:16 INFO HadoopRDD: Input split:
file:/home/peter/work/train.csv:0+15540706 15/06/25 16:27:16 INFO
CacheManager: Partition rdd_12_0 not found, computing it 15/06/25
16:27:16 INFO HadoopRDD: Input split:
file:/home/peter/holdout.csv:0+336296 15/06/25 16:27:16 INFO
CacheManager: Partition rdd_12_2 not found, computing it 15/06/25
16:27:16 INFO HadoopRDD: Input split:
file:/home/peter/train.csv:15540706+14866642 15/06/25 16:27:17
ERROR Executor: Exception in task 1.0 in stage 1.0 (TID 2)
org.spark-project.guava.util.concurrent.ExecutionError:
java.lang.StackOverflowError at
org.spark-project.guava.cache.LocalCache$Segment.get(LocalCache.java:2261)
at
org.spark-project.guava.cache.LocalCache.get(LocalCache.java:4000)
at
org.spark-project.guava.cache.LocalCache.getOrLoad(LocalCache.java:4004)
at
org.spark-project.guava.cache.LocalCache$LocalLoadingCache.get(LocalCache.java:4874)
at
org.apache.spark.sql.catalyst.expressions.codegen.CodeGenerator.generate(CodeGenerator.scala:105)
at
org.apache.spark.sql.catalyst.expressions.codegen.CodeGenerator.generate(CodeGenerator.scala:102)
at
org.apache.spark.sql.execution.SparkPlan.newMutableProjection(SparkPlan.scala:170)
at
org.apache.spark.sql.execution.Project.buildProjection$lzycompute(basicOperators.scala:38)
at
org.apache.spark.sql.execution.Project.buildProjection(basicOperators.scala:38)
at
org.apache.spark.sql.execution.Project$$anonfun$1.apply(basicOperators.scala:41)
at
org.apache.spark.sql.execution.Project$$anonfun$1.apply(basicOperators.scala:40)
at
org.apache.spark.rdd.RDD$$anonfun$mapPartitions$1$$anonfun$apply$17.apply(RDD.scala:686)
at
org.apache.spark.rdd.RDD$$anonfun$mapPartitions$1$$anonfun$apply$17.apply(RDD.scala:686)
at
org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:35)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:277)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:244) at
org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:35)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:277)
at
org.apache.spark.CacheManager.getOrCompute(CacheManager.scala:69)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:242) at
org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:35)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:277)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:244) at
org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:35)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:277)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:244) at
org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:35)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:277)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:244) at
org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:70)
at
org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:41)
at org.apache.spark.scheduler.Task.run(Task.scala:70) at
org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:213)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745) Caused by:
java.lang.StackOverflowError at
scala.reflect.internal.Symbols$Symbol.fullNameInternal(Symbols.scala:1042)
at
scala.reflect.internal.Symbols$Symbol.fullNameAsName(Symbols.scala:1047)
at
scala.reflect.internal.Symbols$Symbol.fullNameInternal(Symbols.scala:1044)
at
scala.reflect.internal.Symbols$Symbol.fullNameAsName(Symbols.scala:1047)
at
scala.reflect.internal.Symbols$Symbol.fullNameInternal(Symbols.scala:1044)
at
scala.reflect.internal.Symbols$Symbol.fullNameAsName(Symbols.scala:1047)
at
scala.reflect.internal.Symbols$Symbol.fullNameInternal(Symbols.scala:1044)
at
scala.reflect.internal.Symbols$Symbol.fullNameAsName(Symbols.scala:1047)
at
scala.reflect.internal.Symbols$Symbol.fullNameInternal(Symbols.scala:1044)
at
scala.reflect.internal.Symbols$Symbol.fullNameAsName(Symbols.scala:1047)
at
scala.reflect.internal.Symbols$Symbol.fullNameInternal(Symbols.scala:1044)
at
scala.reflect.internal.Symbols$Symbol.fullNameAsName(Symbols.scala:1047)
at
scala.reflect.internal.Symbols$Symbol.fullName(Symbols.scala:1036)
at
scala.reflect.internal.Symbols$Symbol.fullName(Symbols.scala:1052)
at
scala.reflect.internal.Types$TypeRef.needsPreString(Types.scala:2462)
at
scala.reflect.internal.Types$TypeRef.preString(Types.scala:2465)
at
scala.reflect.internal.Types$TypeRef.safeToString(Types.scala:2514) at
scala.reflect.internal.Types$class.typeToString(Types.scala:7345)
at
scala.reflect.runtime.JavaUniverse.scala$reflect$runtime$SynchronizedTypes$$super$typeToString(JavaUniverse.scala:12)
at
scala.reflect.runtime.SynchronizedTypes$class.typeToString(SynchronizedTypes.scala:79)
at
scala.reflect.runtime.JavaUniverse.typeToString(JavaUniverse.scala:12)
at scala.reflect.internal.Types$Type.toString(Types.scala:1018) at
scala.reflect.internal.Printers$TreePrinter.printTree(Printers.scala:398)
at
scala.reflect.internal.Printers$TreePrinter$$anonfun$print$1.apply(Printers.scala:446)
at
scala.reflect.internal.Printers$TreePrinter$$anonfun$print$1.apply(Printers.scala:443)
at
scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33)
at
scala.collection.mutable.WrappedArray.foreach(WrappedArray.scala:34)
at
scala.reflect.internal.Printers$TreePrinter.print(Printers.scala:443)
at
scala.reflect.internal.Printers$TreePrinter.printOpt(Printers.scala:159)
at
scala.reflect.internal.Printers$TreePrinter.printTree(Printers.scala:218)
at
scala.reflect.internal.Printers$TreePrinter$$anonfun$print$1.apply(Printers.scala:446)
at
scala.reflect.internal.Printers$TreePrinter$$anonfun$print$1.apply(Printers.scala:443)
at
scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33)
at
scala.collection.mutable.WrappedArray.foreach(WrappedArray.scala:34)
at
scala.reflect.internal.Printers$TreePrinter.print(Printers.scala:443)
at
scala.reflect.internal.Printers$TreePrinter$$anonfun$printColumn$2.apply(Printers.scala:95)
at
scala.reflect.internal.Printers$TreePrinter$$anonfun$printColumn$2.apply(Printers.scala:95)
at
scala.reflect.internal.Printers$TreePrinter.printSeq(Printers.scala:89)
at
scala.reflect.internal.Printers$TreePrinter.printSeq(Printers.scala:89)
at
scala.reflect.internal.Printers$TreePrinter.printSeq(Printers.scala:89)
at
scala.reflect.internal.Printers$TreePrinter.printSeq(Printers.scala:89)
at
scala.reflect.internal.Printers$TreePrinter.printSeq(Printers.scala:89)
at
scala.reflect.internal.Printers$TreePrinter.printSeq(Printers.scala:89)
at
scala.reflect.internal.Printers$TreePrinter.printSeq(Printers.scala:89)
at
scala.reflect.internal.Printers$TreePrinter.printSeq(Printers.scala:89)
...
For thin dataset it works, but fails for wide one.
Thanks,
Peter Rudenko
