Jurgen Van Gael created SQOOP-891:
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             Summary: Sqoop export from S3 to MySQL fails when S3 is not 
default filesystem.
                 Key: SQOOP-891
                 URL: https://issues.apache.org/jira/browse/SQOOP-891
             Project: Sqoop
          Issue Type: Bug
          Components: tools
    Affects Versions: 1.4.1-incubating
         Environment: CDH4.1.3 on Amazon EC2
            Reporter: Jurgen Van Gael


I recently tried to use sqoop to export a Hive table that lives on S3 into my 
MySQL server (sqoop export --options-file config.txt --table _universe 
--export-dir s3n://key:secret@mybucket/universe --input-fields-terminated-by 
'\0001' -m 1 --input-null-string '\\N' --input-null-non-string '\\N'^C). My 
Sqoop runs on a CDH4 cluster on EC2. I was getting errors such as the following:

13/02/11 17:37:15 ERROR security.UserGroupInformation: 
PriviledgedActionException as:XXX (auth:SIMPLE) 
cause:java.io.FileNotFoundException: File does not exist: 
/universe/000000_0.snappy
13/02/11 17:37:15 ERROR tool.ExportTool: Encountered IOException running export 
job: java.io.FileNotFoundException: File does not exist: 
/universe/000000_0.snappy

Since the files do exist on S3, I was reminded of getting the same errors when 
running Hive queries against this table. The reason Hive was failing back then 
is because of a bug in CombineFileInputFormat when using it against a 
non-default file system. These issues have since been fixed in Hadoop:
https://issues.apache.org/jira/browse/MAPREDUCE-1806
https://issues.apache.org/jira/browse/MAPREDUCE-2704
I believe Sqoop uses a version of CombineFileInputFormat but as far as I can 
tell from the latest sources on GIT hasn't incorporated the above fixes.

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