Hello,
I'm just trying to figure out the dependency spaghetti! The scufl2-iwir
jar seems to be in the 'tavtool' lib forlder:
ls taverna-language-commandline/target/taverna-language-commandline/lib/
(...lots of jars)
scufl2-iwir-0.2-20150619.152911-2.jar
It is marked as an optional in the taverna-language-commandline pom
<dependency>
<groupId>no.s11.scufl2</groupId>
<artifactId>scufl2-iwir</artifactId>
<version>0.2-SNAPSHOT</version>
<optional>true</optional>
</dependency>
I commented the dependency out and there were no problems with mvn clean
install plus the jar is no longer in the lib. I'm not 100% clear why
this dependency is here anyway, isn't the conversion done by the
workflow bundle tool?
So, looks like you can remove the dependency from the tavtool although
you will probably need some doc updates to point out that iwir is not
supported now.
Cheers,
Ian
On 26/01/2016 14:14, Stian Soiland-Reyes wrote:
> On 26 Jan 2016 13:45, "Ian Dunlop" <[email protected]> wrote:
>>
>> Hello,
>>
>> The scufl2-iwir tool pom
>> https://github.com/stain/scufl2-iwir/blob/master/pom.xml lists an LGPL
>> dependency
>>
>> <groupId>org.shiwa.fgi.iwir</groupId>
>> <artifactId>iwirTool</artifactId>
>> <version>1.1.11</version>
>> <!-- WARNING: LGPL dependency -->
>> <!-- See http://sourceforge.net/projects/iwirtool/ -->
>>
>> Is that a problem for an Apache release?
>
> Ouch, scufl2-iwir is a dependency Menaka added to tavtool, as one of the
> conversion formats.
>
> It should not be a problem as long as it is an optional dependency which is
> not pulled into use inadvertently. It might be worth checking the tavtool
> lib folder after compilation if it does so.
>
> As I was not sure at the time (plus this was experimental) I put the IWIR
> support in a separate repository. Perhaps this should move to
> taverna-extras Github organisations, which we said was for plugins with
> LGPL or GPL licences/dependencies.
>
> Do we need this ependency to compile (e.g. release) or can scufl2-iwir
> dependency be commented out / moved to a Maven profile?
>
> I guess this is a bit of spaghetti leftover :/ as scufl2-iwir is a plugin
> for scufl2-api to deal with the IWIR format, but Menaka added IWIR support
> to the tavtool, and both are part of taverna-language while scufl2-iwir is
> outside Apache Taverna.
>
> I am not sure why this dependency is SNAPSHOT though, I can try to release
> it, and to a better repository (Central?)
>
> Really the scufl2 command line tool might need a pluggable structure so
> third-party plugins (even if that third party in this case is me!) can be
> dropped into say the lib folder rather than by editing the pom.xml
>
>>
>> Cheers,
>>
>> Ian
>>
>> On 26/01/2016 12:15, Ian Dunlop wrote:
>>> Hello,
>>>
>>> Looks like https://github.com/stain/scufl2-iwir needs to be released
>>> without SNAPSHOT version. The SNAPSHOT is available from the mygrid repo
>>>
> http://repository.mygrid.org.uk/artifactory/mygrid-snapshots/no/s11/scufl2/scufl2-iwir/0.2-SNAPSHOT/
>>>
>>> Cheers,
>>>
>>> Ian
>>>
>>> On 26/01/2016 12:09, Ian Dunlop wrote:
>>>> Hello,
>>>>
>>>> Yes it is in
>>>>
> https://github.com/apache/incubator-taverna-language/blob/master/taverna-language-commandline/pom.xml
>>>> which (IIRC) is the module that menaka built for GSOC. I think the last
>>>> release did not include this module -
>>>>
> https://github.com/apache/incubator-taverna-language/commit/349460af1447cd04bfea59b047a99ab85652c185
> .
>>>>
>>>> <dependency>
>>>> <groupId>no.s11.scufl2</groupId>
>>>> <artifactId>scufl2-iwir</artifactId>
>>>> <version>0.2-SNAPSHOT</version>
>>>> <optional>true</optional>
>>>> </dependency>
>>>>
>>>> So it looks like we need to get the no.s11.scufl2:scufl2-iwir
> dependency
>>>> deployed 'properly'
>>>>
>>>> Cheers,
>>>>
>>>> Ian
>>>>
>>>> On 25/01/2016 17:27, Andy Seaborne wrote:
>>>>> On 25/01/16 16:37, Ian Dunlop wrote:
>>>>>> Hello
>>>>>>
>>>>>> Pasted from IRC chat!
>>>>>>
>>>>>> "Was going to try a taverna-language release but mvn release:prepare
>>>>>> asked if I wanted to resolve some SNAPSHOT dependencies
>>>>>> [15:42] <IanD_> I said no which resulted in: [ERROR] Failed to
> execute
>>>>>> goal org.apache.maven.plugins:maven-release-plugin:2.5.2:prepare
>>>>>> (default-cli) on project taverna-language: Can't release project due
> to
>>>>>> non released dependencies : [ERROR]
>>>>>> no.s11.scufl2:scufl2-iwir:jar:0.2-SNAPSHOT:compile
>>>>>> [15:43] <IanD_> [ERROR] in project 'Apache Taverna Language
> Commandline'
>>>>>>
> (org.apache.taverna.language:taverna-language-commandline:jar:0.15.1-incubating-SNAPSHOT)"
>>>>>>
>>>>>>
>>>>>> Any ideas?
>>>>>> Cheers,
>>>>>>
>>>>>> Ian
>>>>>>
>>>>>
>>>>> One reason this can happen is when, somewhere, a module depends on a
>>>>> SNAPSHOT and it's getting that SNAPSHOT from the repo, not as part of
>>>>> the build.
>>>>>
>>>>> Andy
>>>>>
>>>>>
>>>>>
>>>>
>>>
>>
>> --
>> Ian Dunlop, eScience Lab
>> School of Computer Science
>> The University of Manchester
>> http://orcid.org/0000-0001-7066-3350
>
--
Ian Dunlop, eScience Lab
School of Computer Science
The University of Manchester
http://orcid.org/0000-0001-7066-3350
