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https://issues.apache.org/jira/browse/TAVERNA-892?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15141189#comment-15141189
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Stian Soiland-Reyes commented on TAVERNA-892:
---------------------------------------------
Not so sure about JENA-1039.. some other kind of race-condition.
Error is in:
https://github.com/apache/jena/blob/jena-3.0.1/jena-tdb/src/main/java/org/apache/jena/tdb/sys/EnvTDB.java#L33
{code}
TDB.getContext().putAll(context) ;
{code}
which calls:
https://github.com/apache/jena/blob/jena-3.0.1/jena-tdb/src/main/java/org/apache/jena/tdb/TDB.java#L112
and in
https://github.com/apache/jena/blob/jena-3.0.1/jena-arq/src/main/java/org/apache/jena/query/ARQ.java#L597
this assumes ARQ has already been initialized in
https://github.com/apache/jena/blob/jena-3.0.1/jena-arq/src/main/java/org/apache/jena/query/ARQ.java#L560
which is reasonable looking at the documented levels in
https://github.com/apache/jena/blob/jena-3.0.1/jena-core/src/main/java/org/apache/jena/system/JenaSystem.java#L31
and
http://jena.apache.org/documentation/notes/system-initialization.html
Perhaps something is wrong with using the jena-osgi packaging of
initializations?
If I use jena-arq 3.0.1 instead of jena-osgi 3.0.1
all tests in robundle work, so it is probably something wrong with overwrites of
{code}
META-INF/services/org.apache.jena.system.JenaSubsystemLifecycle
{code}
in jena-osgi.jar:
{code}
stain@biggie:~/.m2/repository/org/apache/jena/jena-osgi$ unzip
./3.0.1/jena-osgi-3.0.1.jar
META-INF/services/org.apache.jena.system.JenaSubsystemLifecycle
Archive: ./3.0.1/jena-osgi-3.0.1.jar
inflating: META-INF/services/org.apache.jena.system.JenaSubsystemLifecycle
stain@biggie:~/.m2/repository/org/apache/jena/jena-osgi$ cat
META-INF/services/org.apache.jena.system.JenaSubsystemLifecycle
org.apache.jena.tdb.sys.InitTDB
{code}
I'll report it upstream.
> Update to Jena 3.0.1
> --------------------
>
> Key: TAVERNA-892
> URL: https://issues.apache.org/jira/browse/TAVERNA-892
> Project: Apache Taverna
> Issue Type: Bug
> Components: Taverna Language, Taverna Maven Parent
> Reporter: Stian Soiland-Reyes
> Assignee: Stian Soiland-Reyes
> Priority: Minor
>
> As Jena 3.0.1 is now released, we should update taverna-maven-parent to use
> {code}
> <jena.version>3.0.1</jena.version>
> {code}
> instead of 2.13.0.
> Note that Jena 3 includes change of package names to from com.hp.hpl.jena to
> org.apache.jena
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