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https://issues.apache.org/jira/browse/TAVERNA-877?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
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Stian Soiland-Reyes updated TAVERNA-877:
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Labels: cwl gsoc2016 (was: cwl)
> SCUFL2-reader for Common Workflow Language workflows
> ----------------------------------------------------
>
> Key: TAVERNA-877
> URL: https://issues.apache.org/jira/browse/TAVERNA-877
> Project: Apache Taverna
> Issue Type: New Feature
> Components: Taverna Language
> Reporter: Stian Soiland-Reyes
> Priority: Minor
> Labels: cwl, gsoc2016
>
> Common Workflow Language
> http://common-workflow-language.github.io/
> ..is an emerging standard for computational workflows with a focus on
> bioinformatics command line tools using Docker.
> The semantics of CWL are inspired by Taverna's SCUFL2 model and the Wf4Ever
> wfdesc vocabulary.
> A good first approximation for integration of CWL for Taverna would be to
> parse/read CWL workflows into the SCUFL2 model of Taverna Language.
> Running CWL workflows can be achieved by interpreting CWL Tools (which are
> described in JSON) as a way to configure the Tool Activity with docker
> commands.
> But this SCUFL2 reader can just represent the CWL configurations as-is.
> There's an early Java SDK for CWL parsing just made, under development at
> https://github.com/common-workflow-language/cwljava/
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