Hello all,
I tried running the helloworld.wfbundle example in Windows 10 (Version
10.0.10586) using cmd.exe and got an error:
ERROR 2016-07-07 09:27:41,603 (org.apache.jena.riot:84) - [line: 1, col: 1
] Content is not allowed in prolog.
I then tried running the helloanyone.wfbundle example. When I ran it
without an input, I got an error that it expected 'Name", but when I tried
entering a name in singe quotes, I still got an error (see below). I also
tried the command with no quotation marks at all (log4j errors) and with
double quotation marks (similar/same error as with singe quotes).
Is there a step I'm missing?
Thanks,
Gale
HELLOANYONE ERRORS: input = 'Gale'
C:\src\_RC3_CL\apache-taverna-commandline-3.1.0-incubating\
taverna-commandline-product\target\apache-taverna-
commandline-3.1.0-incubating>executeworkflow.bat
examples/helloanyone.wfbundle 'Gale'
ERROR 2016-07-07 09:58:28,042
(org.springframework.osgi.extender.internal.activator.ContextLoaderListener:52)
- Application context refresh failed
(OsgiBundleXmlApplicationContext(bundle=org.apache.taverna.commandline.taverna-commandline-common,
config=osgibundle:/META-INF/spring/*.xml))
org.springframework.beans.factory.BeanCreationException: Error creating
bean with name 'commandLineTool' defined in URL
[bundle://127.0:0/META-INF/spring/taverna-commandline-common-context.xml]:
Invocation of init method failed; nested exception is
java.lang.reflect.UndeclaredThrowableException
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1420)
(more error text available)
------------------------------------
HELLOANYONE ERRORS when input does not match expected input
*********************************
*** input without single quotes
C:\src\_RC3_CL\apache-taverna-commandline-3.1.0-incubating\taverna-commandline-product\target\apache-taverna-commandline-3.1.0-incubating>executeworkflow.bat
examples/helloanyone.wfbundle Gale
log4j:WARN No appenders could be found for logger
(org.springframework.osgi.extender.internal.dependencies.startup.DependencyServiceManager).
log4j:WARN No appenders could be found for logger
(org.springframework.osgi.service.dependency.internal.DefaultMandatoryDependencyManager).
log4j:WARN No appenders could be found for logger
(org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor).
log4j:WARN Please initialize the log4j system properly.
log4j:WARN No appenders could be found for logger
(org.springframework.osgi.service.importer.support.OsgiServiceProxyFactoryBean).
log4j:WARN See http://logging.apache.org/log4j/1.2/faq.html#noconfig for
more info.
log4j:WARN Please initialize the log4j system properly.
log4j:WARN Please initialize the log4j system properly.
log4j:WARN See http://logging.apache.org/log4j/1.2/faq.html#noconfig for
more info.
log4j:WARN Please initialize the log4j system properly.
log4j:WARN See http://logging.apache.org/log4j/1.2/faq.html#noconfig
for more info.
log4j:WARN See http://logging.apache.org/log4j/1.2/faq.html#noconfig for
more info.
ERROR 2016-07-07 10:01:59,775
(org.springframework.osgi.extender.internal.activator.ContextLoaderListener:52)
- Application context refresh failed
(OsgiBundleXmlApplicationContext(bundle=org.apache.taverna.commandline.taverna-commandline-common,
config=osgibundle:/META-INF/spring/*.xml))
org.springframework.beans.factory.BeanCreationException: Error creating
bean with name 'commandLineTool' defined in URL
[bundle://127.0:0/META-INF/spring/taverna-commandline-common-context.xml]:
Invocation of init method failed; nested exception is
java.lang.reflect.UndeclaredThrowableException
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1420)
************************************
**** input using double quotes
C:\src\_RC3_CL\apache-taverna-commandline-3.1.0-incubating\taverna-commandline-product\target\apache-taverna-commandline-3.1.0-incubating>executeworkflow.bat
examples/helloanyone.wfbundle "Gale"
ERROR 2016-07-07 10:15:48,443
(org.springframework.osgi.extender.internal.activator.ContextLoaderListener:52)
- Application context refresh failed
(OsgiBundleXmlApplicationContext(bundle=org.apache.taverna.commandline.taverna-commandline-common,
config=osgibundle:/META-INF/spring/*.xml))
org.springframework.beans.factory.BeanCreationException: Error creating
bean with name 'commandLineTool' defined in URL
[bundle://127.0:0/META-INF/spring/taverna-commandline-common-context.xml]:
Invocation of init method failed; nested exception is
java.lang.reflect.UndeclaredThrowableException
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1420)
------------------------------------
HELLOANYONE ERRORS: (no input) - included for completeness only
C:\src\_RC3_CL\apache-taverna-commandline-3.1.0-incubating\taverna-commandline-product\target\apache-taverna-commandline-3.1.0-incubating>executeworkflow.bat
examples/helloanyone.wfbundle
ERROR 2016-07-07 09:57:24,177
(org.apache.taverna.commandline.CommandLineTool:417) - The number of inputs
provided does not match the number of input ports.
1 inputs were expected which are:
'name'
0 inputs were provided
org.apache.taverna.commandline.exceptions.InputMismatchException: The
number of inputs provided does not match the number of input ports.
1 inputs were expected which are:
'name'
0 inputs were provided
at
org.apache.taverna.commandline.data.InputsHandler.checkProvidedInputs(InputsHandler.java:105)
at
org.apache.taverna.commandline.CommandLineTool.setupAndExecute(CommandLineTool.java:246)
at
org.apache.taverna.commandline.CommandLineTool.run(CommandLineTool.java:109)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeCustomInitMethod(AbstractAutowireCapableBeanFactory.java:1544)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1485)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1417)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:519)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:456)
at
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:291)
at
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
at
org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:288)
at
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:190)
at
org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:580)
at
org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:895)
at
org.springframework.osgi.context.support.AbstractDelegatedExecutionApplicationContext.access$1600(AbstractDelegatedExecutionApplicationContext.java:62)
at
org.springframework.osgi.context.support.AbstractDelegatedExecutionApplicationContext$4.run(AbstractDelegatedExecutionApplicationContext.java:327)
at
org.springframework.osgi.util.internal.PrivilegedUtils.executeWithCustomTCCL(PrivilegedUtils.java:87)
at
org.springframework.osgi.context.support.AbstractDelegatedExecutionApplicationContext.completeRefresh(AbstractDelegatedExecutionApplicationContext.java:292)
at
org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor$CompleteRefreshTask.run(DependencyWaiterApplicationContextExecutor.java:138)
at java.lang.Thread.run(Unknown Source)
The number of inputs provided does not match the number of input ports.
1 inputs were expected which are:
'name'
0 inputs were provided
<end of error output>
On Thu, Jul 7, 2016 at 2:01 AM Stian Soiland-Reyes <[email protected]> wrote:
> On 7 July 2016 at 09:29, Chamini Prashakthi Jayasinghe
> <[email protected]> wrote:
> > Can we run taverna command line module in windows 10.if yes please
> explain
>
> Yes, Windows 10 was explicitly tested for the 3.1.0 release.
>
> If you have downloaded from
> https://taverna.incubator.apache.org/download/commandline/
>
> Then follow the README from
>
>
> https://github.com/apache/incubator-taverna-commandline/blob/master/README.md#prerequisites
>
>
> First of all you will need to install JDK 8 for Windows x64 (or for
> x86 if you have an older machine):
>
>
> http://www.oracle.com/technetwork/java/javase/downloads/jdk8-downloads-2133151.html
>
> then Apache Maven
>
> https://maven.apache.org/download.cgi
>
>
> After which you can run
>
> mvn clean install
>
> within the unpacked taverna-commandline folder.
>
>
> Note that the README mentions:
>
> > If you are building on Windows, ensure you unpack this source code to a
> folder with a short path name lenght, e.g.C:\src - as Windows has a
> limitation on the total path length which might otherwise prevent this code
> from building successfully.
>
>
> After building, see
>
> https://github.com/apache/incubator-taverna-commandline/blob/master/README.md#running
>
> on how to run it.
>
>
>
> We would welcome suggestions on how to improve these build
> instructions in the README and/or website. :)
>
>
>
>
>
>
>
> --
> Stian Soiland-Reyes
> Apache Taverna (incubating), Apache Commons
> http://orcid.org/0000-0001-9842-9718
>
