On 24-Jul-16 10:18, Nadeesh Dilanga wrote:
Hi Alan, Hi Stian,
Thanks Nadeesh.
If the code needs any improvements/changes, please let me know. And given
the code is fine, can you please advice me on my next steps ?
There are four optional tasks:
* Validate Docker activity config, e.g. can the docker image be pulled?
* Capture docker metadata and add to workflow run provenance (e.g. which
docker image ID was pulled)
* Add Bioboxes support
* Integrate with CWL support (TAVERNA-900)
Personally, I would look at bioboxes http://bioboxes.org/ - but others
may disagree.
There are existing bioboxes docker images - search for bioboxes at
https://hub.docker.com.
So, I think you should try to run a biobox docker image. Then create a
small workflow that includes the running of the image. There are also
examples on the bioboxes.org website that show how different bioboxes
can be connected to perform a scientific task. You may (if you have
time) be able to encode some of these as workflows.
Please don't forget that this is all optional and do not feel under
pressure to do it all :)
Alan
