Awesome job you two. ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Chris Mattmann, Ph.D. Chief Architect Instrument Software and Science Data Systems Section (398) NASA Jet Propulsion Laboratory Pasadena, CA 91109 USA Office: 168-519, Mailstop: 168-527 Email: [email protected] WWW: http://sunset.usc.edu/~mattmann/ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Adjunct Associate Professor, Computer Science Department University of Southern California, Los Angeles, CA 90089 USA ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
-----Original Message----- From: Annie Burgess <[email protected]> Reply-To: "[email protected]" <[email protected]>, "[email protected]" <[email protected]> Date: Tuesday, June 3, 2014 5:20 PM To: Tyler Palsulich <[email protected]>, "<[email protected]>" <[email protected]> Subject: Re: unit test error for new parser >Thanks for the input Tyler! I've fixed the issue by adding a bit of code >to ensure a String is passed to MatFileReader when the unit test is run in >maven. The test now successfully compiles - I'll add the code to >reviewboard soon for others to scope. > >Annie > > > >On Tue, Jun 3, 2014 at 2:16 PM, Tyler Palsulich <[email protected]> >wrote: > >> Hi Annie, >> >> I looks like your problem is with >>`MatFileReader(org.apache.tika.io.CloseShieldInputStream)`. >> I think the MatFileReader constructor will only take a File or String >> filename ( >> >>http://intra.csb.ethz.ch/javadoc/metabolic/com/jmatio/io/MatFileReader.ht >>ml). >> If you switch the constructor call to use the filename, instead of the >> InputStream, I wonder if that will fix the issue. >> >> Hope that helps, >> Tyler >> >> >> On Tue, Jun 3, 2014 at 3:07 PM, Annie Burgess <[email protected]> >> wrote: >> >>> Hi dev group, >>> >>> I've put together a new parser for Matlab (.mat) files. I successfully >>> compile and execute the new parser at the command line as: >>> >>> javac -classpath >>> >>>../../../../tika-core/target/tika-core-1.6-SNAPSHOT.jar:../../../../jmat >>>io-1.2.jar >>> edu/usc/sunset/burgess/tika/MatParser.java >>> >>> java -classpath >>> >>>annie-parsers.jar:tika-app/target/tika-app-1.6-SNAPSHOT.jar:jmatio-1.2.j >>>ar >>> org.apache.tika.cli.TikaCLI --metadata >>> /Users/annbryant/POLARCYBER/breidamerkurjokull_radar_profiles_2009.mat >>> >>> >>> However, I've written a unit test for the new parser and have come to a >>> roadblock. >>> >>> The new parser uses a 3rd party jar, JmatIO, file available on Maven >>> Central ( >>> >>>http://search.maven.org/#artifactdetails%7Cnet.sourceforge.jmatio%7Cjmat >>>io%7C1.0%7Cjar >>> ), which I have included as a dependency in the tika-parsers/pom.xml >>>with >>> the following: >>> >>> <dependency> >>> <groupId>net.sourceforge.jmatio</groupId> >>> <artifactId>jmatio</artifactId> >>> <version>1.0</version> >>> </dependency> >>> >>> >>> When I run the unit test in maven, maven seems to be able to find the >>> appropriate class files from the 3rd party jar, i.e. I don't get any >>> "missing package" or "can't find symbol' errors from the 'import' >>> commands: import com.jmatio.io.MatFileHeader; However, the test fails >>> when the first instance of one of the JmatIO classes is called within >>>the >>> parser. >>> >>> Are there some steps I'm missing when integrating a third party jar in >>>a >>> unit test? >>> >>> I have attached the new parser and the parser test. >>> >>> Please let me know if any other information would be useful. >>> >>> Annie >>> >>> >>> >>>************************************************************************ >>>***************** >>> >>> abryant:tika-parsers abryant$ mvn -Dtest=MatParserTest compile >>> >>> [INFO] >>> >>>------------------------------------------------------------------------ >>> [INFO] Building Apache Tika parsers 1.6-SNAPSHOT >>> [INFO] >>> >>>------------------------------------------------------------------------ >>> [INFO] >>> [INFO] --- maven-remote-resources-plugin:1.2.1:process (default) @ >>> tika-parsers --- >>> [INFO] >>> [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ >>> tika-parsers --- >>> [debug] execute contextualize >>> [INFO] Using 'UTF-8' encoding to copy filtered resources. >>> [INFO] Copying 5 resources >>> [INFO] Copying 3 resources >>> [INFO] >>> [INFO] --- maven-compiler-plugin:2.3.2:compile (default-compile) @ >>> tika-parsers --- >>> [INFO] Compiling 1 source file to >>> /Users/annbryant/TIKA/tika/tika-parsers/target/classes >>> [INFO] ------------------------------------------------------------- >>> [ERROR] COMPILATION ERROR : >>> [INFO] ------------------------------------------------------------- >>> [ERROR] >>> >>>/Users/annbryant/TIKA/tika/tika-parsers/src/main/java/org/apache/tika/pa >>>rser/mat/MatParser.java:[69,23] >>> cannot find symbol >>> symbol : constructor >>> MatFileReader(org.apache.tika.io.CloseShieldInputStream) >>> location: class com.jmatio.io.MatFileReader >>> [INFO] 1 error >>> [INFO] ------------------------------------------------------------- >>> [INFO] >>> >>>------------------------------------------------------------------------ >>> [INFO] BUILD FAILURE >>> [INFO] >>> >>>------------------------------------------------------------------------ >>> [INFO] Total time: 5.213s >>> [INFO] Finished at: Tue Jun 03 12:54:15 AKDT 2014 >>> [INFO] Final Memory: 16M/81M >>> [INFO] >>> >>>------------------------------------------------------------------------ >>> [ERROR] Re-run Maven using the -X switch to enable full debug logging. >>> [ERROR] >>> [ERROR] For more information about the errors and possible solutions, >>> please read the following articles: >>> [ERROR] [Help 1] >>> http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException >>> >>> >>> -- >>> >>> >>>------------------------------------------------------------------------ >>>------------------ >>> Ann Bryant Burgess, PhD >>> >>> Postdoctoral Fellow >>> Computer Science Department >>> University of Southern California >>> Viterbi School of Engineering >>> Los Angeles, CA >>> >>> Alaska Science Center/USGS >>> Anchorage, AK >>> >>> Cell: (585) 738-7549 >>> Office: (907) 786-7059 >>> Fax: (907) 786-7150 >>> E-mail: [email protected] >>> Office Address: 4210 University Dr., Anchorage, AK 99508-4626 >>> >>> >>>------------------------------------------------------------------------ >>>------------------- >>> >> >> > > >-- >-------------------------------------------------------------------------- >---------------- >Ann Bryant Burgess, PhD > >Postdoctoral Fellow >Computer Science Department >University of Southern California >Viterbi School of Engineering >Los Angeles, CA > >Alaska Science Center/USGS >Anchorage, AK > >Cell: (585) 738-7549 >Office: (907) 786-7059 >Fax: (907) 786-7150 >E-mail: [email protected] >Office Address: 4210 University Dr., Anchorage, AK 99508-4626 >-------------------------------------------------------------------------- >-----------------
