run fails but has output

[Yi-Wen Liu]

Hello,

I am still stuck in the following error of DUCC and job always got canceled
by driver:

16 Nov 2015 23:34:38,353  INFO JobDriver - T[18] advanceJdState
current=Initializing request=Active result=Active
16 Nov 2015 23:34:39,066 ERROR ProxyLogger - T[17] loggify
org.xml.sax.SAXParseException; Trying to serialize non-XML 1.0
character: , 0x0
        at 
org.apache.uima.util.XMLSerializer$CharacterValidatingContentHandler.checkForInvalidXmlChars(XMLSerializer.java:254)

16 Nov 2015 23:34:39,066 ERROR CasManager - T[17] getMetaCas
org.apache.uima.ducc.container.common.classloader.ProxyException
        at 
org.apache.uima.ducc.container.jd.classload.ProxyJobDriverCollectionReader.getMetaCas(ProxyJobDriverCollectionReader.java:127)
        at 
org.apache.uima.ducc.container.jd.cas.CasManager.getMetaCas(CasManager.java:65)
        at 
org.apache.uima.ducc.container.jd.fsm.wi.ActionGet.engage(ActionGet.java:118)
        at 
org.apache.uima.ducc.container.common.fsm.Fsm.transition(Fsm.java:172)

16 Nov 2015 23:34:39,068 ERROR ActionGet - T[17] engage
org.apache.uima.ducc.container.jd.JobDriverException
        at 
org.apache.uima.ducc.container.jd.cas.CasManager.getMetaCas(CasManager.java:74)
        at 
org.apache.uima.ducc.container.jd.fsm.wi.ActionGet.engage(ActionGet.java:118)


However, when I looked into output directory, there were output (much
omitted from below):

<?xml version="1.0" encoding="UTF-8"?><CAS version="2">
    <uima.cas.Sofa _indexed="0" _id="1" sofaNum="1" sofaID="_InitialView"
mimeType="text" sofaString="&#13;&#10;Dr.
Nutritious&#13;&#10;&#13;&#10;Medical Nutrition Therapy for
Hyperlipidemia&#13;&#10;&#13;&#10;Referral from: Julie Tester, RD, LD,
CNSD&#13;&#10;Phone contact: (555) 555-1212&#13;&#10;Height: 144 cm
Current Weight: 45 kg   Date of current weight: 02-29-2001   Admit Weight:
 53 kg   BMI: 18 kg/m2&#13;&#10;Diet: General&#13;&#10;Daily Calorie needs
(kcals): 1500 calories, assessed as HB + 20% for activity.&#13;&#10;Daily
Protein needs: 40 grams,  assessed as 1.0 g/kg.&#13;&#10;Pt has been on a
3-day calorie count and has had an average intake of 1100 calories.  She
was instructed to drink 2-3 cans of liquid supplement to help promote
weight gain.  She agrees with the plan and has my number for further
assessment. May want a Resting Metabolic Rate as well. She takes an aspirin
a day for knee pain.&#13;&#10;"/>
    <org.apache.ctakes.typesystem.type.structured.DocumentID _indexed="1"
_id="8" documentID="testpatient_plaintext_1.txt"/>
    <uima.tcas.DocumentAnnotation _indexed="1" _id="10" _ref_sofa="1"
begin="0" end="735" language="x-unspecified"/>
    <org.apache.ctakes.typesystem.type.textspan.Segment _indexed="1"
_id="15" _ref_sofa="1" begin="0" end="735" id="SIMPLE_SEGMENT"/>
    <org.apache.ctakes.typesystem.type.textspan.Sentence _indexed="1"
_id="21" _ref_sofa="1" begin="2" end="16" sentenceNumber="0"/>
..
..
..
    <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="2975"
codingScheme="SNOMED" code="103733002" oid="103733002#SNOMED" score="0.0"
disambiguated="false" cui="C0087111" tui="T061"/>
    <uima.cas.FSArray _id="3005" size="4">
        <i>2975</i>
        <i>2985</i>
        <i>2965</i>
        <i>2995</i>
    </uima.cas.FSArray>
    <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="2924"
codingScheme="SNOMED" code="243121000" oid="243121000#SNOMED" score="0.0"
disambiguated="false" cui="C0418981" tui="T061"/>
    <uima.cas.FSArray _id="2934" size="1">
        <i>2924</i>
    </uima.cas.FSArray>
    <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="2870"
codingScheme="RXNORM" code="1191" oid="1191#RXNORM" score="0.0"
disambiguated="false" cui="C0004057" tui="T121"/>
    <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="2880"
codingScheme="RXNORM" code="1191" oid="1191#RXNORM" score="0.0"
disambiguated="false" cui="C0004057" tui="T109"/>
    <uima.cas.FSArray _id="2890" size="2">
        <i>2880</i>
        <i>2870</i>
    </uima.cas.FSArray>
</CAS>


I am not sure what's going on here, the job wasn't in running stage but has
output...
It always got canceled by driver and showed run fails after initializing,
so I didn't expect there would have any output file.
And I also doubt whether the content in output file is correct....any
suggestion is appreciated!

Thanks,
Yi-Wen