Hi, Tim. Thanks for the reply. v1.2.3 and v1.2.4rc1 were both compiled, without problems, from tarballs.
Tim Prins wrote: > Hi Karol, > > Thanks for the reports. > > I cannot help with the first problem. Maybe someone else can. > > Problem 2: I have committed your suggested fix in r16163. > > As for the third problem, this is very strange. It looks like what is > happening is that we are in the ompi/mpi/f77 directory compiling a .c > file. This includes ompi_config.h, which includes ompi_config_bottom.h, > which then includes string.h (/usr/include/string.h). So far so good. > > Here is where it gets nasty. On FreeBSD, /usr/include/string.h includes > strings.h in some cases. But there is a strings.h in the ompi/mpi/f77 > directory, so that is getting included instead of the proper > /usr/include/strings.h. > > I suppose we could rename our strings.h to f77_strings.h, or something > similar. Does anyone have an opinion on this? > > When you compiled v1.2.3 and the v1.2.4 prerelease, did you compile from > a tarball or a subversion checkout? I ask because it looks like the > above problem will only happen when the developer debugging code is > enabled, which is the default when building from a subversion checkout. > > Thanks again for your reports, > > Tim > > Karol Mroz wrote: >> Hi. I have been trying to build the latest ompi-trunk (as of yesterday) >> svn snapshot (r16158) of OpenMPI on a FreeBSD 6.2 machine and have run >> into 3 build problems. I was curious if anyone else has encountered >> these errors and if they are being addressed. >> >> Problem 1 >> --------- >> When running the autogen.sh script as non-root, I see the following error: >> ************************************************************************* >> *** Running GNU tools >> [Running] autom4te --language=m4sh ompi_get_version.m4sh -o >> ompi_get_version.sh >> [Running] aclocal >> /usr/local/share/aclocal/glib.m4:8: warning: underquoted >> definition of >> AM_PATH_GLIB >> /usr/local/share/aclocal/glib.m4:8: run info '(automake)Extending >> aclocal' >> /usr/local/share/aclocal/glib.m4:8: or see >> http://sources.redhat.com/automake/automake.html#Extending-aclocal >> [Running] autoheader >> ** Adjusting libtool for OMPI :-( >> ++ patching for pathscale multi-line output (LT 1.5.x) >> [Running] autoconf >> [Running] libtoolize --automake --copy --ltdl >> -- Moving libltdl to opal/ >> ** Updating Automake version in libltdl package >> [Running] aclocal >> acinclude.m4:6405: the serial number must appear before any macro >> definition >> /usr/local/share/aclocal/glib.m4:8: warning: underquoted >> definition of >> AM_PATH_GLIB >> /usr/local/share/aclocal/glib.m4:8: run info '(automake)Extending >> aclocal' >> /usr/local/share/aclocal/glib.m4:8: or see >> http://sources.redhat.com/automake/automake.html#Extending-aclocal >> [Running] automake >> [Running] autoconf >> autom4te-2.61: cannot open configure: Permission denied >> >> ------------------------------------------------------------------------- >> It seems that the execution of "autoconf" has failed. See above for >> the specific error message that caused it to abort. >> ------------------------------------------------------------------------- >> ************************************************************************* >> >> After some searching, it would appear that this is an autoconf issue >> that crops up in FreeBSD but, for whatever reason, not in Linux. A quick >> workaround is to add: `chmod -vr u+w *` just before autogen issues the >> `run_and_check $ompi_autoconf` command on line 438. >> >> >> Problem 2: >> ---------- >> After correcting the autogen.sh script, running it and then running >> configure with --prefix=some_directory as a parameter, it was time to >> `make all install.` Following is console output: >> >> ************************************************************************ >> gcc -DHAVE_CONFIG_H -I. -I../../opal/include -I../../orte/include >> -I../../ompi/include -I../../opal/mca/paffinity/linux/plpa/src/libplpa >> -I../.. -g -Wall -Wundef -Wno-long-long -Wsign-compare >> -Wmissing-prototypes -Wstrict-prototypes -Wcomment -pedantic >> -Werror-implicit-function-declaration -finline-functions >> -fno-strict-aliasing -pthread -MT opal_pty.lo -MD -MP -MF >> .deps/opal_pty.Tpo -c opal_pty.c -fPIC -DPIC -o .libs/opal_pty.o >> opal_pty.c: In function `opal_openpty': >> opal_pty.c:127: error: implicit declaration of function `openpty' >> *** Error code 1 >> >> Stop in /usr/home/kmroz/work/ompi-trunk/opal/util. >> *** Error code 1 >> >> Stop in /usr/home/kmroz/work/ompi-trunk/opal/util. >> *** Error code 1 >> >> Stop in /usr/home/kmroz/work/ompi-trunk/opal. >> *** Error code 1 >> >> Stop in /usr/home/kmroz/work/ompi-trunk. >> *********************************************************************** >> >> It would seem that openpty needs to have libutil.h included on a >> freeBSD machine. I added a quick #ifdef/#include of libutil.h in >> opal/util/opal_pty.c and restarted make. >> >> Problem 3: >> ---------- >> Compilation made it a little further this time around, but began >> complaining about ompi/mpi/f77/strings.h. More console output: >> >> *********************************************************************** >> gcc -DHAVE_CONFIG_H -I. -I../../../opal/include -I../../../orte/include >> -I../../../ompi/include >> -I../../../opal/mca/paffinity/linux/plpa/src/libplpa >> -DOMPI_PROFILE_LAYER=0 -DOMPI_COMPILING_F77_WRAPPERS=1 -I../../.. -g >> -Wall -Wundef -Wno-long-long -Wsign-compare -Wmissing-prototypes >> -Wstrict-prototypes -Wcomment -pedantic >> -Werror-implicit-function-declaration -finline-functions >> -fno-strict-aliasing -pthread -MT attr_fn_f.lo -MD -MP -MF >> .deps/attr_fn_f.Tpo -c attr_fn_f.c -fPIC -DPIC -o .libs/attr_fn_f.o >> In file included from /usr/include/string.h:49, >> from ../../../opal/include/opal_config_bottom.h:365, >> from ../../../opal/include/opal_config.h:1432, >> from ../../../ompi/include/ompi_config.h:26, >> from attr_fn_f.c:20: >> ./strings.h:43: error: syntax error before "int" >> ./strings.h:59: error: syntax error before "int" >> ./strings.h:78: error: syntax error before "int" >> ./strings.h:94: error: syntax error before "int" >> *** Error code 1 >> >> Stop in /usr/home/kmroz/work/ompi-trunk/ompi/mpi/f77. >> *** Error code 1 >> >> Stop in /usr/home/kmroz/work/ompi-trunk/ompi/mpi/f77. >> *** Error code 1 >> >> Stop in /usr/home/kmroz/work/ompi-trunk/ompi/mpi. >> *** Error code 1 >> >> Stop in /usr/home/kmroz/work/ompi-trunk/ompi. >> *** Error code 1 >> >> Stop in /usr/home/kmroz/work/ompi-trunk. >> *********************************************************************** >> >> I ended up changing function declarations in ompi/mpi/f77/strings.h from >> 'OMPI_DECLSPEC int function_name()' to simply 'int function_name()' >> which also appears to be how it was done in the last stable (v1.2.3) >> release. This final change allowed make to complete. >> >> --- >> >> Please note, these errors were seen in ompi-trunk (r16158). The current >> stable release (v1.2.3) as well as the pre-release (v1.2.4) do NOT >> exhibit any of these problems when compiled on FreeBSD 6.2. >> >> One final note: running autogen.sh on a linux machine followed by >> configure/make on freeBSD was also attempted to see if some of the >> source or build scripts were being generated incorrectly on FreeBSD. >> However, this yielded the same errors with ompi-trunk as mentioned above. >> >> Any ideas? >> > _______________________________________________ > devel mailing list > de...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/devel -- Karol Mroz km...@cs.ubc.ca
