I have access to PGI compilers 10.{3,4,5,8} on an Opteron/InifiniBand
cluster running Scientific Linux 5.4 (an RHEL derivative like the Centos
distro). I can try to reproduce Larry Baker's problems today with the
most recent 10.8 compiler. If there are other things I could/should be
trying to complement or confirm Larry's findings, let me know.
-Paul
Larry Baker wrote:
OpenMPI 1.5rc5 make fails for the PGI 10.3 compilers:
make[2]: Entering directory
`/home/baker/openmpi-1.5rc5/opal/tools/wrappers'
CC opal_wrapper.o
CCLD opal_wrapper
../../../opal/.libs/libopen-pal.so: undefined reference to
`pthread_create'
../../../opal/.libs/libopen-pal.so: undefined reference to `assert'
../../../opal/.libs/libopen-pal.so: undefined reference to
`pthread_mutex_trylock'
../../../opal/.libs/libopen-pal.so: undefined reference to
`pthread_atfork'
../../../opal/.libs/libopen-pal.so: undefined reference to `pthread_join'
make[2]: *** [opal_wrapper] Error 2
make[2]: Leaving directory
`/home/baker/openmpi-1.5rc5/opal/tools/wrappers'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/home/baker/openmpi-1.5rc5/opal'
make: *** [all-recursive] Error 1
I have not had time yet to track this down. I am at a conference
today and tomorrow, so I might not have time to look into this until
Wednesday.
I configured OpenMPI with:
[baker@hydra openmpi-1.5rc5]$ ./configure >configure.log 2>&1
--prefix=/opt/pgi/linux86-64/10.3/openmpi-1.5rc5 --with-sge
--with-wrapper-cflags="-DNO_PGI_OFFSET"
--with-wrapper-cxxflags="-DNO_PGI_OFFSET" CC="pgcc -m64"
CFLAGS="-g -fast -tp amd64 -DNO_PGI_OFFSET" CXX="pgcpp -m64"
CXXFLAGS="-g -fast -tp amd64 -DNO_PGI_OFFSET" FC="pgf90 -m64"
FCFLAGS="-g -fast -tp amd64" F77="pgf90 -m64" FFLAGS="-g -fast
-tp amd64"
The O/S is CentOS 4.5 Linux x86_64:
[baker@hydra ~]$ cat /etc/redhat-release CentOS release 4.5 (Final)
[baker@hydra ~]$ uname -a
Linux hydra.wr.usgs.gov 2.6.9-55.0.2.ELsmp #1 SMP Tue Jun 26 14:14:47
EDT 2007 x86_64 x86_64 x86_64 GNU/Linux
Larry Baker
US Geological Survey
650-329-5608
ba...@usgs.gov
On Aug 17, 2010, at 2:18 PM, Jeff Squyres wrote:
We still have one known possible regression:
https://svn.open-mpi.org/trac/ompi/ticket/2530
But we posted rc5 anyway (there's a bunch of stuff that has been
pending for a while that is now in). Please test!
http://www.open-mpi.org/software/ompi/v1.5/
--
Jeff Squyres
jsquy...@cisco.com
For corporate legal information go to:
http://www.cisco.com/web/about/doing_business/legal/cri/
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--
Paul H. Hargrove phhargr...@lbl.gov
Future Technologies Group
HPC Research Department Tel: +1-510-495-2352
Lawrence Berkeley National Laboratory Fax: +1-510-486-6900
