Ew. Let me take this upstream to hwloc and see what we can do here. :-\
On Feb 9, 2011, at 7:37 AM, Nathan Hjelm wrote: > I ran into an error compiling the trunk on one of our clusters. It appears > that a bug in glibc (version 2.5) causes __pthread_cleanup_routine to be > defined when pthread.h is included and compiling with -std=gnu99 and > -fexceptions. > > The obvious fix is for lanl to upgrade either the cluser's gcc (which > undoubtedly has a workaround) or glibc. But, seeing OpenMPI can not require > c99 (as much as I would like to require c99) it might be a good idea to > remove the c99 requirement on hwloc. > > Any comments? Better ideas? > > Error: > mca/paffinity/hwloc/.libs/libmca_paffinity_hwloc.a(paffinity_hwloc_module.o): > In function `__pthread_cleanup_routine': > /usr/include/pthread.h:580: multiple definition of `__pthread_cleanup_routine' > mca/paffinity/hwloc/.libs/libmca_paffinity_hwloc.a(paffinity_hwloc_component.o):/usr/include/pthread.h:580: > first defined here > mca/paffinity/hwloc/.libs/libmca_paffinity_hwloc.a(bind.o): In function > `__pthread_cleanup_routine': > /usr/include/pthread.h:580: multiple definition of `__pthread_cleanup_routine' > mca/paffinity/hwloc/.libs/libmca_paffinity_hwloc.a(paffinity_hwloc_component.o):/usr/include/pthread.h:580: > first defined here > mca/paffinity/hwloc/.libs/libmca_paffinity_hwloc.a(cpuset.o): In function > `__pthread_cleanup_routine': > /usr/include/pthread.h:580: multiple definition of `__pthread_cleanup_routine' > mca/paffinity/hwloc/.libs/libmca_paffinity_hwloc.a(paffinity_hwloc_component.o):/usr/include/pthread.h:580: > first defined here > mca/paffinity/hwloc/.libs/libmca_paffinity_hwloc.a(misc.o): In function > `__pthread_cleanup_routine': > /usr/include/pthread.h:580: multiple definition of `__pthread_cleanup_routine' > mca/paffinity/hwloc/.libs/libmca_paffinity_hwloc.a(paffinity_hwloc_component.o):/usr/include/pthread.h:580: > first defined here > mca/paffinity/hwloc/.libs/libmca_paffinity_hwloc.a(topology-linux.o): In > function `__pthread_cleanup_routine': > /usr/include/pthread.h:580: multiple definition of `__pthread_cleanup_routine' > mca/paffinity/hwloc/.libs/libmca_paffinity_hwloc.a(paffinity_hwloc_component.o):/usr/include/pthread.h:580: > first defined here > mca/paffinity/hwloc/.libs/libmca_paffinity_hwloc.a(topology-synthetic.o): In > function `__pthread_cleanup_routine': > /usr/include/pthread.h:580: multiple definition of `__pthread_cleanup_routine' > mca/paffinity/hwloc/.libs/libmca_paffinity_hwloc.a(paffinity_hwloc_component.o):/usr/include/pthread.h:580: > first defined here > mca/paffinity/hwloc/.libs/libmca_paffinity_hwloc.a(topology-x86.o): In > function `__pthread_cleanup_routine': > /usr/include/pthread.h:580: multiple definition of `__pthread_cleanup_routine' > mca/paffinity/hwloc/.libs/libmca_paffinity_hwloc.a(paffinity_hwloc_component.o):/usr/include/pthread.h:580: > first defined here > mca/paffinity/hwloc/.libs/libmca_paffinity_hwloc.a(topology-xml.o): In > function `__pthread_cleanup_routine': > /usr/include/pthread.h:580: multiple definition of `__pthread_cleanup_routine' > mca/paffinity/hwloc/.libs/libmca_paffinity_hwloc.a(paffinity_hwloc_component.o):/usr/include/pthread.h:580: > first defined here > mca/paffinity/hwloc/.libs/libmca_paffinity_hwloc.a(topology.o): In function > `__pthread_cleanup_routine': > /usr/include/pthread.h:580: multiple definition of `__pthread_cleanup_routine' > mca/paffinity/hwloc/.libs/libmca_paffinity_hwloc.a(paffinity_hwloc_component.o):/usr/include/pthread.h:580: > first defined here > mca/paffinity/hwloc/.libs/libmca_paffinity_hwloc.a(traversal.o): In function > `__pthread_cleanup_routine': > /usr/include/pthread.h:580: multiple definition of `__pthread_cleanup_routine' > mca/paffinity/hwloc/.libs/libmca_paffinity_hwloc.a(paffinity_hwloc_component.o):/usr/include/pthread.h:580: > first defined here > > -Nathan Hjelm > HPC-3, LANL > _______________________________________________ > devel mailing list > de...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/devel -- Jeff Squyres jsquy...@cisco.com For corporate legal information go to: http://www.cisco.com/web/about/doing_business/legal/cri/
