Here's a trivial patch that seems to fix it:

Index: autogen.sh
===================================================================
--- autogen.sh  (revision 25674)
+++ autogen.sh  (working copy)
@@ -698,7 +698,9 @@
     rm -f configure.patched

     echo "  ++ Modifying configure for Sun Studio Fortran compilers"
-    config/modify-configure-for-sun-fortran.pl
+    if test -f "config/modify-configure-for-sun-fortran.pl"; then
+        config/modify-configure-for-sun-fortran.pl
+    fi
 }

Unless someone sees an issue, I can add it.


On Dec 20, 2011, at 4:30 PM, Jeff Squyres wrote:

> Yeah, we've known about this one and mostly ignored it.
> 
> It occurs when autogen.sh is in a non-root directory and tries to run that 
> script in a place where it doesn't exist (it does exist in the root 
> directory).  We hadn't previously bothered to fix it because a) it's in 
> autogen and users won't see it, b) we've revamped autogen on the trunk such 
> that this doesn't happen anyway, and c) it's a non-fatal error (and reflects 
> correct behavior anyway -- we don't need that script run anywhere except the 
> root).
> 
> I'll add it to the list, but I don't know if it'll actually get fixed.
> 
> 
> On Dec 20, 2011, at 6:22 PM, Paul H. Hargrove wrote:
> 
>> While trying to resolve the gmake-vs-bmake problem I ran autogen.sh and saw:
>> 
>> /home/phargrov/OMPI/openmpi-1.5.5rc1/openmpi-1.5.5rc1/autogen.sh: line 701: 
>> config/modify-configure-for-sun-fortran.pl: No such file or directory
>> 
>> I suspect this just requires an addition to EXTRA_DIST in config/Makefile.am
>> 
>> -Paul
>> 
>> -- 
>> Paul H. Hargrove                          phhargr...@lbl.gov
>> Future Technologies Group
>> HPC Research Department                   Tel: +1-510-495-2352
>> Lawrence Berkeley National Laboratory     Fax: +1-510-486-6900
>> 
>> _______________________________________________
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> 
> 
> -- 
> Jeff Squyres
> jsquy...@cisco.com
> For corporate legal information go to:
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> 
> 
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