Rats - no help there. I'll add some debug to the code base tonight that will tell us more about what's going on here.
On Jul 3, 2012, at 1:50 PM, Juan A. Rico wrote: > Here is the output. > > [jarico@Metropolis-01 examples]$ > /home/jarico/shared/packages/openmpi-cas-dbg/bin/mpiexec --bind-to-core > --bynode --mca mca_base_verbose 100 --mca mca_coll_base_output 100 --mca > coll_sm_priority 99 -mca hwloc_base_verbose 90 --display-map --mca > mca_verbose 100 --mca mca_base_verbose 100 --mca coll_base_verbose 100 -n 2 > -mca grpcomm_base_verbose 5 ./bmem > [Metropolis-01:24563] mca: base: components_open: Looking for hwloc components > [Metropolis-01:24563] mca: base: components_open: opening hwloc components > [Metropolis-01:24563] mca: base: components_open: found loaded component > hwloc142 > [Metropolis-01:24563] mca: base: components_open: component hwloc142 has no > register function > [Metropolis-01:24563] mca: base: components_open: component hwloc142 has no > open function > [Metropolis-01:24563] hwloc:base:get_topology > [Metropolis-01:24563] hwloc:base: no cpus specified - using root available > cpuset > [Metropolis-01:24563] mca:base:select:(grpcomm) Querying component [bad] > [Metropolis-01:24563] mca:base:select:(grpcomm) Query of component [bad] set > priority to 10 > [Metropolis-01:24563] mca:base:select:(grpcomm) Selected component [bad] > [Metropolis-01:24563] [[36265,0],0] grpcomm:base:receive start comm > -------------------------------------------------------------------------- > WARNING: a request was made to bind a process. While the system > supports binding the process itself, at least one node does NOT > support binding memory to the process location. > > Node: Metropolis-01 > > This is a warning only; your job will continue, though performance may > be degraded. > -------------------------------------------------------------------------- > [Metropolis-01:24563] hwloc:base: get available cpus > [Metropolis-01:24563] hwloc:base:filter_cpus specified - already done > [Metropolis-01:24563] hwloc:base: get available cpus > [Metropolis-01:24563] hwloc:base:filter_cpus specified - already done > [Metropolis-01:24563] hwloc:base: get available cpus > [Metropolis-01:24563] hwloc:base:filter_cpus specified - already done > [Metropolis-01:24563] hwloc:base: get available cpus > [Metropolis-01:24563] hwloc:base:filter_cpus specified - already done > [Metropolis-01:24563] hwloc:base: get available cpus > [Metropolis-01:24563] hwloc:base:filter_cpus specified - already done > [Metropolis-01:24563] hwloc:base: get available cpus > [Metropolis-01:24563] hwloc:base:filter_cpus specified - already done > [Metropolis-01:24563] hwloc:base: get available cpus > [Metropolis-01:24563] hwloc:base:filter_cpus specified - already done > [Metropolis-01:24563] hwloc:base: get available cpus > [Metropolis-01:24563] hwloc:base:filter_cpus specified - already done > [Metropolis-01:24563] hwloc:base:get_nbojbs computed data 8 of Core:0 > [Metropolis-01:24563] hwloc:base: get available cpus > [Metropolis-01:24563] hwloc:base:filter_cpus specified - already done > [Metropolis-01:24563] hwloc:base: get available cpus > [Metropolis-01:24563] hwloc:base:filter_cpus specified - already done > > ======================== JOB MAP ======================== > > Data for node: Metropolis-01 Num procs: 2 > Process OMPI jobid: [36265,1] App: 0 Process rank: 0 > Process OMPI jobid: [36265,1] App: 0 Process rank: 1 > > ============================================================= > [Metropolis-01:24563] [[36265,0],0] grpcomm:bad:xcast sent to job [36265,0] > tag 1 > [Metropolis-01:24563] [[36265,0],0] grpcomm:xcast:recv:send_relay > [Metropolis-01:24563] [[36265,0],0] grpcomm:base:xcast updating daemon nidmap > [Metropolis-01:24563] [[36265,0],0] orte:daemon:send_relay - recipient list > is empty! > [Metropolis-01:24564] mca: base: components_open: Looking for hwloc components > [Metropolis-01:24564] mca: base: components_open: opening hwloc components > [Metropolis-01:24564] mca: base: components_open: found loaded component > hwloc142 > [Metropolis-01:24564] mca: base: components_open: component hwloc142 has no > register function > [Metropolis-01:24564] mca: base: components_open: component hwloc142 has no > open function > [Metropolis-01:24565] mca: base: components_open: Looking for hwloc components > [Metropolis-01:24565] mca: base: components_open: opening hwloc components > [Metropolis-01:24565] mca: base: components_open: found loaded component > hwloc142 > [Metropolis-01:24565] mca: base: components_open: component hwloc142 has no > register function > [Metropolis-01:24565] mca: base: components_open: component hwloc142 has no > open function > [Metropolis-01:24564] mca:base:select:(grpcomm) Querying component [bad] > [Metropolis-01:24564] mca:base:select:(grpcomm) Query of component [bad] set > priority to 10 > [Metropolis-01:24564] mca:base:select:(grpcomm) Selected component [bad] > [Metropolis-01:24564] [[36265,1],0] grpcomm:base:receive start comm > [Metropolis-01:24564] computing locality - getting object at level CORE, > index 0 > [Metropolis-01:24564] hwloc:base: get available cpus > [Metropolis-01:24564] hwloc:base:get_available_cpus first time - filtering > cpus > [Metropolis-01:24564] hwloc:base: no cpus specified - using root available > cpuset > [Metropolis-01:24564] computing locality - getting object at level CORE, > index 1 > [Metropolis-01:24564] hwloc:base: get available cpus > [Metropolis-01:24564] hwloc:base:filter_cpus specified - already done > [Metropolis-01:24564] computing locality - shifting up from L1CACHE > [Metropolis-01:24564] computing locality - shifting up from L2CACHE > [Metropolis-01:24564] computing locality - shifting up from L3CACHE > [Metropolis-01:24564] computing locality - filling level SOCKET > [Metropolis-01:24564] computing locality - filling level NUMA > [Metropolis-01:24564] locality: CL:CU:N:B:Nu:S > [Metropolis-01:24565] mca:base:select:(grpcomm) Querying component [bad] > [Metropolis-01:24565] mca:base:select:(grpcomm) Query of component [bad] set > priority to 10 > [Metropolis-01:24565] mca:base:select:(grpcomm) Selected component [bad] > [Metropolis-01:24565] [[36265,1],1] grpcomm:base:receive start comm > [Metropolis-01:24564] mca: base: components_open: Looking for coll components > [Metropolis-01:24564] mca: base: components_open: opening coll components > [Metropolis-01:24564] mca: base: components_open: found loaded component tuned > [Metropolis-01:24564] mca: base: components_open: component tuned has no > register function > [Metropolis-01:24564] coll:tuned:component_open: done! > [Metropolis-01:24564] mca: base: components_open: component tuned open > function successful > [Metropolis-01:24564] mca: base: components_open: found loaded component sm > [Metropolis-01:24564] mca: base: components_open: component sm register > function successful > [Metropolis-01:24564] mca: base: components_open: component sm has no open > function > [Metropolis-01:24564] mca: base: components_open: found loaded component > libnbc > [Metropolis-01:24564] mca: base: components_open: component libnbc register > function successful > [Metropolis-01:24564] mca: base: components_open: component libnbc open > function successful > [Metropolis-01:24564] mca: base: components_open: found loaded component > hierarch > [Metropolis-01:24564] mca: base: components_open: component hierarch has no > register function > [Metropolis-01:24564] mca: base: components_open: component hierarch open > function successful > [Metropolis-01:24564] mca: base: components_open: found loaded component basic > [Metropolis-01:24564] mca: base: components_open: component basic register > function successful > [Metropolis-01:24564] mca: base: components_open: component basic has no open > function > [Metropolis-01:24564] mca: base: components_open: found loaded component inter > [Metropolis-01:24564] mca: base: components_open: component inter has no > register function > [Metropolis-01:24564] mca: base: components_open: component inter open > function successful > [Metropolis-01:24564] mca: base: components_open: found loaded component self > [Metropolis-01:24564] mca: base: components_open: component self has no > register function > [Metropolis-01:24564] mca: base: components_open: component self open > function successful > [Metropolis-01:24565] computing locality - getting object at level CORE, > index 1 > [Metropolis-01:24565] hwloc:base: get available cpus > [Metropolis-01:24565] hwloc:base:get_available_cpus first time - filtering > cpus > [Metropolis-01:24565] hwloc:base: no cpus specified - using root available > cpuset > [Metropolis-01:24565] hwloc:base: get available cpus > [Metropolis-01:24565] hwloc:base:filter_cpus specified - already done > [Metropolis-01:24565] computing locality - getting object at level CORE, > index 0 > [Metropolis-01:24565] computing locality - shifting up from L1CACHE > [Metropolis-01:24565] computing locality - shifting up from L2CACHE > [Metropolis-01:24565] computing locality - shifting up from L3CACHE > [Metropolis-01:24565] computing locality - filling level SOCKET > [Metropolis-01:24565] computing locality - filling level NUMA > [Metropolis-01:24565] locality: CL:CU:N:B:Nu:S > [Metropolis-01:24563] [[36265,0],0] COLLECTIVE RECVD FROM [[36265,1],0] > [Metropolis-01:24563] [[36265,0],0] WORKING COLLECTIVE 0 > [Metropolis-01:24563] [[36265,0],0] ADDING [[36265,1],WILDCARD] TO > PARTICIPANTS > [Metropolis-01:24563] [[36265,0],0] PROGRESSING COLLECTIVE 0 > [Metropolis-01:24563] [[36265,0],0] PROGRESSING COLL id 0 > [Metropolis-01:24563] [[36265,0],0] ALL LOCAL PROCS CONTRIBUTE 2 > [Metropolis-01:24564] [[36265,1],0] grpcomm:base:modex: performing modex > [Metropolis-01:24564] [[36265,1],0] grpcomm:base:pack_modex: reporting 4 > entries > [Metropolis-01:24564] [[36265,1],0] grpcomm:base:full:modex: executing > allgather > [Metropolis-01:24564] [[36265,1],0] grpcomm:bad entering allgather > [Metropolis-01:24564] [[36265,1],0] grpcomm:bad allgather underway > [Metropolis-01:24564] [[36265,1],0] grpcomm:base:modex: modex posted > [Metropolis-01:24565] mca: base: components_open: Looking for coll components > [Metropolis-01:24565] mca: base: components_open: opening coll components > [Metropolis-01:24565] mca: base: components_open: found loaded component tuned > [Metropolis-01:24565] mca: base: components_open: component tuned has no > register function > [Metropolis-01:24565] coll:tuned:component_open: done! > [Metropolis-01:24565] mca: base: components_open: component tuned open > function successful > [Metropolis-01:24565] mca: base: components_open: found loaded component sm > [Metropolis-01:24565] mca: base: components_open: component sm register > function successful > [Metropolis-01:24565] mca: base: components_open: component sm has no open > function > [Metropolis-01:24565] mca: base: components_open: found loaded component > libnbc > [Metropolis-01:24565] mca: base: components_open: component libnbc register > function successful > [Metropolis-01:24565] mca: base: components_open: component libnbc open > function successful > [Metropolis-01:24565] mca: base: components_open: found loaded component > hierarch > [Metropolis-01:24565] mca: base: components_open: component hierarch has no > register function > [Metropolis-01:24565] mca: base: components_open: component hierarch open > function successful > [Metropolis-01:24565] mca: base: components_open: found loaded component basic > [Metropolis-01:24565] mca: base: components_open: component basic register > function successful > [Metropolis-01:24565] mca: base: components_open: component basic has no open > function > [Metropolis-01:24565] mca: base: components_open: found loaded component inter > [Metropolis-01:24565] mca: base: components_open: component inter has no > register function > [Metropolis-01:24565] mca: base: components_open: component inter open > function successful > [Metropolis-01:24565] mca: base: components_open: found loaded component self > [Metropolis-01:24565] mca: base: components_open: component self has no > register function > [Metropolis-01:24565] mca: base: components_open: component self open > function successful > [Metropolis-01:24563] [[36265,0],0] COLLECTIVE RECVD FROM [[36265,1],1] > [Metropolis-01:24563] [[36265,0],0] WORKING COLLECTIVE 0 > [Metropolis-01:24563] [[36265,0],0] PROGRESSING COLLECTIVE 0 > [Metropolis-01:24563] [[36265,0],0] PROGRESSING COLL id 0 > [Metropolis-01:24563] [[36265,0],0] ALL LOCAL PROCS CONTRIBUTE 2 > [Metropolis-01:24563] [[36265,0],0] COLLECTIVE 0 LOCALLY COMPLETE - SENDING > TO GLOBAL COLLECTIVE > [Metropolis-01:24563] [[36265,0],0] grpcomm:base:daemon_coll: daemon > collective recvd from [[36265,0],0] > [Metropolis-01:24563] [[36265,0],0] grpcomm:base:daemon_coll: WORKING > COLLECTIVE 0 > [Metropolis-01:24563] [[36265,0],0] grpcomm:base:daemon_coll: NUM CONTRIBS: 2 > [Metropolis-01:24563] [[36265,0],0] grpcomm:bad:xcast sent to job [36265,1] > tag 30 > [Metropolis-01:24563] [[36265,0],0] grpcomm:xcast:recv:send_relay > [Metropolis-01:24563] [[36265,0],0] orte:daemon:send_relay - recipient list > is empty! > [Metropolis-01:24565] [[36265,1],1] grpcomm:base:modex: performing modex > [Metropolis-01:24565] [[36265,1],1] grpcomm:base:pack_modex: reporting 4 > entries > [Metropolis-01:24565] [[36265,1],1] grpcomm:base:full:modex: executing > allgather > [Metropolis-01:24565] [[36265,1],1] grpcomm:bad entering allgather > [Metropolis-01:24565] [[36265,1],1] grpcomm:bad allgather underway > [Metropolis-01:24565] [[36265,1],1] grpcomm:base:modex: modex posted > [Metropolis-01:24564] [[36265,1],0] grpcomm:base:receive processing > collective return for id 0 > [Metropolis-01:24564] [[36265,1],0] CHECKING COLL id 0 > [Metropolis-01:24564] [[36265,1],0] STORING MODEX DATA > [Metropolis-01:24564] [[36265,1],0] grpcomm:base:store_modex adding modex > entry for proc [[36265,1],0] > [Metropolis-01:24565] [[36265,1],1] grpcomm:base:receive processing > collective return for id 0 > [Metropolis-01:24565] [[36265,1],1] CHECKING COLL id 0 > [Metropolis-01:24565] [[36265,1],1] STORING MODEX DATA > [Metropolis-01:24565] [[36265,1],1] grpcomm:base:store_modex adding modex > entry for proc [[36265,1],0] > [Metropolis-01:24564] [[36265,1],0] grpcomm:base:update_modex_entries: adding > 4 entries for proc [[36265,1],0] > [Metropolis-01:24564] [[36265,1],0] grpcomm:base:store_modex adding modex > entry for proc [[36265,1],1] > [Metropolis-01:24564] [[36265,1],0] grpcomm:base:update_modex_entries: adding > 4 entries for proc [[36265,1],1] > [Metropolis-01:24565] [[36265,1],1] grpcomm:base:update_modex_entries: adding > 4 entries for proc [[36265,1],0] > [Metropolis-01:24565] [[36265,1],1] grpcomm:base:store_modex adding modex > entry for proc [[36265,1],1] > [Metropolis-01:24565] [[36265,1],1] grpcomm:base:update_modex_entries: adding > 4 entries for proc [[36265,1],1] > [Metropolis-01:24564] coll:find_available: querying coll component tuned > [Metropolis-01:24564] coll:find_available: coll component tuned is available > [Metropolis-01:24565] coll:find_available: querying coll component tuned > [Metropolis-01:24565] coll:find_available: coll component tuned is available > [Metropolis-01:24565] coll:find_available: querying coll component sm > [Metropolis-01:24564] coll:find_available: querying coll component sm > [Metropolis-01:24564] coll:sm:init_query: no other local procs; disqualifying > myself > [Metropolis-01:24564] coll:find_available: coll component sm is not available > [Metropolis-01:24564] coll:find_available: querying coll component libnbc > [Metropolis-01:24564] coll:find_available: coll component libnbc is available > [Metropolis-01:24564] coll:find_available: querying coll component hierarch > [Metropolis-01:24564] coll:find_available: coll component hierarch is > available > [Metropolis-01:24564] coll:find_available: querying coll component basic > [Metropolis-01:24564] coll:find_available: coll component basic is available > [Metropolis-01:24565] coll:sm:init_query: no other local procs; disqualifying > myself > [Metropolis-01:24565] coll:find_available: coll component sm is not available > [Metropolis-01:24565] coll:find_available: querying coll component libnbc > [Metropolis-01:24565] coll:find_available: coll component libnbc is available > [Metropolis-01:24565] coll:find_available: querying coll component hierarch > [Metropolis-01:24565] coll:find_available: coll component hierarch is > available > [Metropolis-01:24565] coll:find_available: querying coll component basic > [Metropolis-01:24565] coll:find_available: coll component basic is available > [Metropolis-01:24564] coll:find_available: querying coll component inter > [Metropolis-01:24564] coll:find_available: coll component inter is available > [Metropolis-01:24564] coll:find_available: querying coll component self > [Metropolis-01:24564] coll:find_available: coll component self is available > [Metropolis-01:24565] coll:find_available: querying coll component inter > [Metropolis-01:24565] coll:find_available: coll component inter is available > [Metropolis-01:24565] coll:find_available: querying coll component self > [Metropolis-01:24565] coll:find_available: coll component self is available > [Metropolis-01:24565] hwloc:base:get_nbojbs computed data 0 of NUMANode:0 > [Metropolis-01:24564] hwloc:base:get_nbojbs computed data 0 of NUMANode:0 > [Metropolis-01:24563] [[36265,0],0] COLLECTIVE RECVD FROM [[36265,1],1] > [Metropolis-01:24563] [[36265,0],0] WORKING COLLECTIVE 1 > [Metropolis-01:24563] [[36265,0],0] ADDING [[36265,1],WILDCARD] TO > PARTICIPANTS > [Metropolis-01:24563] [[36265,0],0] PROGRESSING COLLECTIVE 1 > [Metropolis-01:24563] [[36265,0],0] PROGRESSING COLL id 1 > [Metropolis-01:24563] [[36265,0],0] ALL LOCAL PROCS CONTRIBUTE 2 > [Metropolis-01:24563] [[36265,0],0] COLLECTIVE RECVD FROM [[36265,1],0] > [Metropolis-01:24563] [[36265,0],0] WORKING COLLECTIVE 1 > [Metropolis-01:24563] [[36265,0],0] PROGRESSING COLLECTIVE 1 > [Metropolis-01:24563] [[36265,0],0] PROGRESSING COLL id 1 > [Metropolis-01:24563] [[36265,0],0] ALL LOCAL PROCS CONTRIBUTE 2 > [Metropolis-01:24563] [[36265,0],0] COLLECTIVE 1 LOCALLY COMPLETE - SENDING > TO GLOBAL COLLECTIVE > [Metropolis-01:24563] [[36265,0],0] grpcomm:base:daemon_coll: daemon > collective recvd from [[36265,0],0] > [Metropolis-01:24563] [[36265,0],0] grpcomm:base:daemon_coll: WORKING > COLLECTIVE 1 > [Metropolis-01:24563] [[36265,0],0] grpcomm:base:daemon_coll: NUM CONTRIBS: 2 > [Metropolis-01:24563] [[36265,0],0] grpcomm:bad:xcast sent to job [36265,1] > tag 30 > [Metropolis-01:24563] [[36265,0],0] grpcomm:xcast:recv:send_relay > [Metropolis-01:24563] [[36265,0],0] orte:daemon:send_relay - recipient list > is empty! > [Metropolis-01:24565] [[36265,1],1] grpcomm:bad entering barrier > [Metropolis-01:24565] [[36265,1],1] grpcomm:bad barrier underway > [Metropolis-01:24564] [[36265,1],0] grpcomm:bad entering barrier > [Metropolis-01:24564] [[36265,1],0] grpcomm:bad barrier underway > [Metropolis-01:24564] [[36265,1],0] grpcomm:base:receive processing > collective return for id 1 > [Metropolis-01:24564] [[36265,1],0] CHECKING COLL id 1 > [Metropolis-01:24565] [[36265,1],1] grpcomm:base:receive processing > collective return for id 1 > [Metropolis-01:24565] [[36265,1],1] CHECKING COLL id 1 > [Metropolis-01:24565] coll:base:comm_select: new communicator: MPI_COMM_WORLD > (cid 0) > [Metropolis-01:24565] coll:base:comm_select: Checking all available modules > [Metropolis-01:24565] coll:tuned:module_tuned query called > [Metropolis-01:24565] coll:base:comm_select: component available: tuned, > priority: 30 > [Metropolis-01:24565] coll:base:comm_select: component available: libnbc, > priority: 10 > [Metropolis-01:24565] coll:base:comm_select: component not available: hierarch > [Metropolis-01:24565] coll:base:comm_select: component available: basic, > priority: 10 > [Metropolis-01:24565] coll:base:comm_select: component not available: inter > [Metropolis-01:24565] coll:base:comm_select: component not available: self > [Metropolis-01:24565] coll:tuned:module_init called. > [Metropolis-01:24565] coll:tuned:module_init Tuned is in use > [Metropolis-01:24565] coll:base:comm_select: new communicator: MPI_COMM_SELF > (cid 1) > [Metropolis-01:24565] coll:base:comm_select: Checking all available modules > [Metropolis-01:24564] coll:base:comm_select: new communicator: MPI_COMM_WORLD > (cid 0) > [Metropolis-01:24564] coll:base:comm_select: Checking all available modules > [Metropolis-01:24564] coll:tuned:module_tuned query called > [Metropolis-01:24564] coll:base:comm_select: component available: tuned, > priority: 30 > [Metropolis-01:24564] coll:base:comm_select: component available: libnbc, > priority: 10 > [Metropolis-01:24564] coll:base:comm_select: component not available: hierarch > [Metropolis-01:24564] coll:base:comm_select: component available: basic, > priority: 10 > [Metropolis-01:24564] coll:base:comm_select: component not available: inter > [Metropolis-01:24564] coll:base:comm_select: component not available: self > [Metropolis-01:24564] coll:tuned:module_init called. > [Metropolis-01:24565] coll:tuned:module_tuned query called > [Metropolis-01:24565] coll:base:comm_select: component not available: tuned > [Metropolis-01:24565] coll:base:comm_select: component available: libnbc, > priority: 10 > [Metropolis-01:24565] coll:base:comm_select: component not available: hierarch > [Metropolis-01:24565] coll:base:comm_select: component available: basic, > priority: 10 > [Metropolis-01:24565] coll:base:comm_select: component not available: inter > [Metropolis-01:24565] coll:base:comm_select: component available: self, > priority: 75 > [Metropolis-01:24564] coll:tuned:module_init Tuned is in use > [Metropolis-01:24564] coll:base:comm_select: new communicator: MPI_COMM_SELF > (cid 1) > [Metropolis-01:24564] coll:base:comm_select: Checking all available modules > [Metropolis-01:24564] coll:tuned:module_tuned query called > [Metropolis-01:24564] coll:base:comm_select: component not available: tuned > [Metropolis-01:24564] coll:base:comm_select: component available: libnbc, > priority: 10 > [Metropolis-01:24564] coll:base:comm_select: component not available: hierarch > [Metropolis-01:24564] coll:base:comm_select: component available: basic, > priority: 10 > [Metropolis-01:24564] coll:base:comm_select: component not available: inter > [Metropolis-01:24564] coll:base:comm_select: component available: self, > priority: 75 > [Metropolis-01:24565] [[36265,1],1] grpcomm:bad entering barrier > [Metropolis-01:24563] [[36265,0],0] COLLECTIVE RECVD FROM [[36265,1],1] > [Metropolis-01:24563] [[36265,0],0] WORKING COLLECTIVE 2 > [Metropolis-01:24563] [[36265,0],0] ADDING [[36265,1],WILDCARD] TO > PARTICIPANTS > [Metropolis-01:24563] [[36265,0],0] PROGRESSING COLLECTIVE 2 > [Metropolis-01:24563] [[36265,0],0] PROGRESSING COLL id 2 > [Metropolis-01:24563] [[36265,0],0] ALL LOCAL PROCS CONTRIBUTE 2 > [Metropolis-01:24563] [[36265,0],0] COLLECTIVE RECVD FROM [[36265,1],0] > [Metropolis-01:24563] [[36265,0],0] WORKING COLLECTIVE 2 > [Metropolis-01:24563] [[36265,0],0] PROGRESSING COLLECTIVE 2 > [Metropolis-01:24563] [[36265,0],0] PROGRESSING COLL id 2 > [Metropolis-01:24563] [[36265,0],0] ALL LOCAL PROCS CONTRIBUTE 2 > [Metropolis-01:24563] [[36265,0],0] COLLECTIVE 2 LOCALLY COMPLETE - SENDING > TO GLOBAL COLLECTIVE > [Metropolis-01:24563] [[36265,0],0] grpcomm:base:daemon_coll: daemon > collective recvd from [[36265,0],0] > [Metropolis-01:24563] [[36265,0],0] grpcomm:base:daemon_coll: WORKING > COLLECTIVE 2 > [Metropolis-01:24563] [[36265,0],0] grpcomm:base:daemon_coll: NUM CONTRIBS: 2 > [Metropolis-01:24563] [[36265,0],0] grpcomm:bad:xcast sent to job [36265,1] > tag 30 > [Metropolis-01:24563] [[36265,0],0] grpcomm:xcast:recv:send_relay > [Metropolis-01:24563] [[36265,0],0] orte:daemon:send_relay - recipient list > is empty! > [Metropolis-01:24564] [[36265,1],0] grpcomm:bad entering barrier > [Metropolis-01:24564] [[36265,1],0] grpcomm:bad barrier underway > [Metropolis-01:24564] [[36265,1],0] grpcomm:base:receive processing > collective return for id 2 > [Metropolis-01:24564] [[36265,1],0] CHECKING COLL id 2 > [Metropolis-01:24565] [[36265,1],1] grpcomm:bad barrier underway > [Metropolis-01:24565] [[36265,1],1] grpcomm:base:receive processing > collective return for id 2 > [Metropolis-01:24565] [[36265,1],1] CHECKING COLL id 2 > [Metropolis-01:24565] coll:tuned:component_close: called > [Metropolis-01:24565] coll:tuned:component_close: done! > [Metropolis-01:24565] mca: base: close: component tuned closed > [Metropolis-01:24565] mca: base: close: unloading component tuned > [Metropolis-01:24565] mca: base: close: component libnbc closed > [Metropolis-01:24565] mca: base: close: unloading component libnbc > [Metropolis-01:24565] mca: base: close: unloading component hierarch > [Metropolis-01:24565] mca: base: close: unloading component basic > [Metropolis-01:24565] mca: base: close: unloading component inter > [Metropolis-01:24565] mca: base: close: unloading component self > [Metropolis-01:24565] [[36265,1],1] grpcomm:base:receive stop comm > [Metropolis-01:24564] coll:tuned:component_close: called > [Metropolis-01:24564] coll:tuned:component_close: done! > [Metropolis-01:24564] mca: base: close: component tuned closed > [Metropolis-01:24564] mca: base: close: unloading component tuned > [Metropolis-01:24564] mca: base: close: component libnbc closed > [Metropolis-01:24564] mca: base: close: unloading component libnbc > [Metropolis-01:24564] mca: base: close: unloading component hierarch > [Metropolis-01:24564] mca: base: close: unloading component basic > [Metropolis-01:24564] mca: base: close: unloading component inter > [Metropolis-01:24564] mca: base: close: unloading component self > [Metropolis-01:24564] [[36265,1],0] grpcomm:base:receive stop comm > [Metropolis-01:24563] [[36265,0],0] grpcomm:bad:xcast sent to job [36265,0] > tag 1 > [Metropolis-01:24563] [[36265,0],0] grpcomm:xcast:recv:send_relay > [Metropolis-01:24563] [[36265,0],0] orte:daemon:send_relay - recipient list > is empty! > [jarico@Metropolis-01 examples]$ > > > > El 03/07/2012, a las 21:44, Ralph Castain escribió: > >> Interesting - yes, coll sm doesn't think they are on the same node for some >> reason. Try adding -mca grpcomm_base_verbose 5 and let's see why >> >> >> On Jul 3, 2012, at 1:24 PM, Juan Antonio Rico Gallego wrote: >> >>> The code I run is a simple broadcast. >>> >>> When I do not specify components to run, the output is (more verbose): >>> >>> [jarico@Metropolis-01 examples]$ >>> /home/jarico/shared/packages/openmpi-cas-dbg/bin/mpiexec --mca >>> mca_base_verbose 100 --mca mca_coll_base_output 100 --mca coll_sm_priority >>> 99 -mca hwloc_base_verbose 90 --display-map --mca mca_verbose 100 --mca >>> mca_base_verbose 100 --mca coll_base_verbose 100 -n 2 ./bmem >>> [Metropolis-01:24490] mca: base: components_open: Looking for hwloc >>> components >>> [Metropolis-01:24490] mca: base: components_open: opening hwloc components >>> [Metropolis-01:24490] mca: base: components_open: found loaded component >>> hwloc142 >>> [Metropolis-01:24490] mca: base: components_open: component hwloc142 has no >>> register function >>> [Metropolis-01:24490] mca: base: components_open: component hwloc142 has no >>> open function >>> [Metropolis-01:24490] hwloc:base:get_topology >>> [Metropolis-01:24490] hwloc:base: no cpus specified - using root available >>> cpuset >>> >>> ======================== JOB MAP ======================== >>> >>> Data for node: Metropolis-01 Num procs: 2 >>> Process OMPI jobid: [36336,1] App: 0 Process rank: 0 >>> Process OMPI jobid: [36336,1] App: 0 Process rank: 1 >>> >>> ============================================================= >>> [Metropolis-01:24491] mca: base: components_open: Looking for hwloc >>> components >>> [Metropolis-01:24491] mca: base: components_open: opening hwloc components >>> [Metropolis-01:24491] mca: base: components_open: found loaded component >>> hwloc142 >>> [Metropolis-01:24491] mca: base: components_open: component hwloc142 has no >>> register function >>> [Metropolis-01:24491] mca: base: components_open: component hwloc142 has no >>> open function >>> [Metropolis-01:24492] mca: base: components_open: Looking for hwloc >>> components >>> [Metropolis-01:24492] mca: base: components_open: opening hwloc components >>> [Metropolis-01:24492] mca: base: components_open: found loaded component >>> hwloc142 >>> [Metropolis-01:24492] mca: base: components_open: component hwloc142 has no >>> register function >>> [Metropolis-01:24492] mca: base: components_open: component hwloc142 has no >>> open function >>> [Metropolis-01:24491] locality: CL:CU:N:B >>> [Metropolis-01:24491] hwloc:base: get available cpus >>> [Metropolis-01:24491] hwloc:base:get_available_cpus first time - filtering >>> cpus >>> [Metropolis-01:24491] hwloc:base: no cpus specified - using root available >>> cpuset >>> [Metropolis-01:24491] hwloc:base:get_available_cpus root object >>> [Metropolis-01:24491] mca: base: components_open: Looking for coll >>> components >>> [Metropolis-01:24491] mca: base: components_open: opening coll components >>> [Metropolis-01:24491] mca: base: components_open: found loaded component >>> tuned >>> [Metropolis-01:24491] mca: base: components_open: component tuned has no >>> register function >>> [Metropolis-01:24491] coll:tuned:component_open: done! >>> [Metropolis-01:24491] mca: base: components_open: component tuned open >>> function successful >>> [Metropolis-01:24491] mca: base: components_open: found loaded component sm >>> [Metropolis-01:24491] mca: base: components_open: component sm register >>> function successful >>> [Metropolis-01:24491] mca: base: components_open: component sm has no open >>> function >>> [Metropolis-01:24491] mca: base: components_open: found loaded component >>> libnbc >>> [Metropolis-01:24491] mca: base: components_open: component libnbc register >>> function successful >>> [Metropolis-01:24491] mca: base: components_open: component libnbc open >>> function successful >>> [Metropolis-01:24491] mca: base: components_open: found loaded component >>> hierarch >>> [Metropolis-01:24491] mca: base: components_open: component hierarch has no >>> register function >>> [Metropolis-01:24491] mca: base: components_open: component hierarch open >>> function successful >>> [Metropolis-01:24491] mca: base: components_open: found loaded component >>> basic >>> [Metropolis-01:24491] mca: base: components_open: component basic register >>> function successful >>> [Metropolis-01:24491] mca: base: components_open: component basic has no >>> open function >>> [Metropolis-01:24491] mca: base: components_open: found loaded component >>> inter >>> [Metropolis-01:24491] mca: base: components_open: component inter has no >>> register function >>> [Metropolis-01:24491] mca: base: components_open: component inter open >>> function successful >>> [Metropolis-01:24491] mca: base: components_open: found loaded component >>> self >>> [Metropolis-01:24491] mca: base: components_open: component self has no >>> register function >>> [Metropolis-01:24491] mca: base: components_open: component self open >>> function successful >>> [Metropolis-01:24492] locality: CL:CU:N:B >>> [Metropolis-01:24492] hwloc:base: get available cpus >>> [Metropolis-01:24492] hwloc:base:get_available_cpus first time - filtering >>> cpus >>> [Metropolis-01:24492] hwloc:base: no cpus specified - using root available >>> cpuset >>> [Metropolis-01:24492] hwloc:base:get_available_cpus root object >>> [Metropolis-01:24492] mca: base: components_open: Looking for coll >>> components >>> [Metropolis-01:24492] mca: base: components_open: opening coll components >>> [Metropolis-01:24492] mca: base: components_open: found loaded component >>> tuned >>> [Metropolis-01:24492] mca: base: components_open: component tuned has no >>> register function >>> [Metropolis-01:24492] coll:tuned:component_open: done! >>> [Metropolis-01:24492] mca: base: components_open: component tuned open >>> function successful >>> [Metropolis-01:24492] mca: base: components_open: found loaded component sm >>> [Metropolis-01:24492] mca: base: components_open: component sm register >>> function successful >>> [Metropolis-01:24492] mca: base: components_open: component sm has no open >>> function >>> [Metropolis-01:24492] mca: base: components_open: found loaded component >>> libnbc >>> [Metropolis-01:24492] mca: base: components_open: component libnbc register >>> function successful >>> [Metropolis-01:24492] mca: base: components_open: component libnbc open >>> function successful >>> [Metropolis-01:24492] mca: base: components_open: found loaded component >>> hierarch >>> [Metropolis-01:24492] mca: base: components_open: component hierarch has no >>> register function >>> [Metropolis-01:24492] mca: base: components_open: component hierarch open >>> function successful >>> [Metropolis-01:24492] mca: base: components_open: found loaded component >>> basic >>> [Metropolis-01:24492] mca: base: components_open: component basic register >>> function successful >>> [Metropolis-01:24492] mca: base: components_open: component basic has no >>> open function >>> [Metropolis-01:24492] mca: base: components_open: found loaded component >>> inter >>> [Metropolis-01:24492] mca: base: components_open: component inter has no >>> register function >>> [Metropolis-01:24492] mca: base: components_open: component inter open >>> function successful >>> [Metropolis-01:24492] mca: base: components_open: found loaded component >>> self >>> [Metropolis-01:24492] mca: base: components_open: component self has no >>> register function >>> [Metropolis-01:24492] mca: base: components_open: component self open >>> function successful >>> [Metropolis-01:24491] coll:find_available: querying coll component tuned >>> [Metropolis-01:24491] coll:find_available: coll component tuned is available >>> [Metropolis-01:24491] coll:find_available: querying coll component sm >>> [Metropolis-01:24491] coll:sm:init_query: no other local procs; >>> disqualifying myself >>> [Metropolis-01:24491] coll:find_available: coll component sm is not >>> available >>> [Metropolis-01:24491] coll:find_available: querying coll component libnbc >>> [Metropolis-01:24491] coll:find_available: coll component libnbc is >>> available >>> [Metropolis-01:24491] coll:find_available: querying coll component hierarch >>> [Metropolis-01:24491] coll:find_available: coll component hierarch is >>> available >>> [Metropolis-01:24491] coll:find_available: querying coll component basic >>> [Metropolis-01:24491] coll:find_available: coll component basic is available >>> [Metropolis-01:24491] coll:find_available: querying coll component inter >>> [Metropolis-01:24492] coll:find_available: querying coll component tuned >>> [Metropolis-01:24492] coll:find_available: coll component tuned is available >>> [Metropolis-01:24492] coll:find_available: querying coll component sm >>> [Metropolis-01:24492] coll:sm:init_query: no other local procs; >>> disqualifying myself >>> [Metropolis-01:24492] coll:find_available: coll component sm is not >>> available >>> [Metropolis-01:24492] coll:find_available: querying coll component libnbc >>> [Metropolis-01:24492] coll:find_available: coll component libnbc is >>> available >>> [Metropolis-01:24492] coll:find_available: querying coll component hierarch >>> [Metropolis-01:24492] coll:find_available: coll component hierarch is >>> available >>> [Metropolis-01:24492] coll:find_available: querying coll component basic >>> [Metropolis-01:24492] coll:find_available: coll component basic is available >>> [Metropolis-01:24492] coll:find_available: querying coll component inter >>> [Metropolis-01:24492] coll:find_available: coll component inter is available >>> [Metropolis-01:24492] coll:find_available: querying coll component self >>> [Metropolis-01:24492] coll:find_available: coll component self is available >>> [Metropolis-01:24491] coll:find_available: coll component inter is available >>> [Metropolis-01:24491] coll:find_available: querying coll component self >>> [Metropolis-01:24491] coll:find_available: coll component self is available >>> [Metropolis-01:24492] hwloc:base:get_nbojbs computed data 0 of NUMANode:0 >>> [Metropolis-01:24491] hwloc:base:get_nbojbs computed data 0 of NUMANode:0 >>> [Metropolis-01:24491] coll:base:comm_select: new communicator: >>> MPI_COMM_WORLD (cid 0) >>> [Metropolis-01:24491] coll:base:comm_select: Checking all available modules >>> [Metropolis-01:24491] coll:tuned:module_tuned query called >>> [Metropolis-01:24491] coll:base:comm_select: component available: tuned, >>> priority: 30 >>> [Metropolis-01:24491] coll:base:comm_select: component available: libnbc, >>> priority: 10 >>> [Metropolis-01:24491] coll:base:comm_select: component not available: >>> hierarch >>> [Metropolis-01:24491] coll:base:comm_select: component available: basic, >>> priority: 10 >>> [Metropolis-01:24491] coll:base:comm_select: component not available: inter >>> [Metropolis-01:24491] coll:base:comm_select: component not available: self >>> [Metropolis-01:24491] coll:tuned:module_init called. >>> [Metropolis-01:24491] coll:tuned:module_init Tuned is in use >>> [Metropolis-01:24491] coll:base:comm_select: new communicator: >>> MPI_COMM_SELF (cid 1) >>> [Metropolis-01:24491] coll:base:comm_select: Checking all available modules >>> [Metropolis-01:24491] coll:tuned:module_tuned query called >>> [Metropolis-01:24491] coll:base:comm_select: component not available: tuned >>> [Metropolis-01:24491] coll:base:comm_select: component available: libnbc, >>> priority: 10 >>> [Metropolis-01:24491] coll:base:comm_select: component not available: >>> hierarch >>> [Metropolis-01:24491] coll:base:comm_select: component available: basic, >>> priority: 10 >>> [Metropolis-01:24491] coll:base:comm_select: component not available: inter >>> [Metropolis-01:24491] coll:base:comm_select: component available: self, >>> priority: 75 >>> [Metropolis-01:24492] coll:base:comm_select: new communicator: >>> MPI_COMM_WORLD (cid 0) >>> [Metropolis-01:24492] coll:base:comm_select: Checking all available modules >>> [Metropolis-01:24492] coll:tuned:module_tuned query called >>> [Metropolis-01:24492] coll:base:comm_select: component available: tuned, >>> priority: 30 >>> [Metropolis-01:24492] coll:base:comm_select: component available: libnbc, >>> priority: 10 >>> [Metropolis-01:24492] coll:base:comm_select: component not available: >>> hierarch >>> [Metropolis-01:24492] coll:base:comm_select: component available: basic, >>> priority: 10 >>> [Metropolis-01:24492] coll:base:comm_select: component not available: inter >>> [Metropolis-01:24492] coll:base:comm_select: component not available: self >>> [Metropolis-01:24492] coll:tuned:module_init called. >>> [Metropolis-01:24492] coll:tuned:module_init Tuned is in use >>> [Metropolis-01:24492] coll:base:comm_select: new communicator: >>> MPI_COMM_SELF (cid 1) >>> [Metropolis-01:24492] coll:base:comm_select: Checking all available modules >>> [Metropolis-01:24492] coll:tuned:module_tuned query called >>> [Metropolis-01:24492] coll:base:comm_select: component not available: tuned >>> [Metropolis-01:24492] coll:base:comm_select: component available: libnbc, >>> priority: 10 >>> [Metropolis-01:24492] coll:base:comm_select: component not available: >>> hierarch >>> [Metropolis-01:24492] coll:base:comm_select: component available: basic, >>> priority: 10 >>> [Metropolis-01:24492] coll:base:comm_select: component not available: inter >>> [Metropolis-01:24492] coll:base:comm_select: component available: self, >>> priority: 75 >>> [Metropolis-01:24491] coll:tuned:component_close: called >>> [Metropolis-01:24491] coll:tuned:component_close: done! >>> [Metropolis-01:24492] coll:tuned:component_close: called >>> [Metropolis-01:24492] coll:tuned:component_close: done! >>> [Metropolis-01:24492] mca: base: close: component tuned closed >>> [Metropolis-01:24492] mca: base: close: unloading component tuned >>> [Metropolis-01:24492] mca: base: close: component libnbc closed >>> [Metropolis-01:24492] mca: base: close: unloading component libnbc >>> [Metropolis-01:24492] mca: base: close: unloading component hierarch >>> [Metropolis-01:24492] mca: base: close: unloading component basic >>> [Metropolis-01:24492] mca: base: close: unloading component inter >>> [Metropolis-01:24492] mca: base: close: unloading component self >>> [Metropolis-01:24491] mca: base: close: component tuned closed >>> [Metropolis-01:24491] mca: base: close: unloading component tuned >>> [Metropolis-01:24491] mca: base: close: component libnbc closed >>> [Metropolis-01:24491] mca: base: close: unloading component libnbc >>> [Metropolis-01:24491] mca: base: close: unloading component hierarch >>> [Metropolis-01:24491] mca: base: close: unloading component basic >>> [Metropolis-01:24491] mca: base: close: unloading component inter >>> [Metropolis-01:24491] mca: base: close: unloading component self >>> [jarico@Metropolis-01 examples]$ >>> >>> >>> SM is not load because it detects no other processes in the same machine: >>> >>> [Metropolis-01:24491] coll:sm:init_query: no other local procs; >>> disqualifying myself >>> >>> The machine is a multicore machine with 8 cores. >>> >>> I need to run SM component code, and I suppose that raising priority it >>> will be the component selected when problem is solved. >>> >>> >>> >>> El 03/07/2012, a las 21:01, Jeff Squyres escribió: >>> >>>> The issue is that the "sm" coll component only implements a few of the MPI >>>> collective operations. It is usually mixed at run-time with other coll >>>> components to fill out the rest of the MPI collective operations. >>>> >>>> So what is happening is that OMPI is determining that it doesn't have >>>> implementations of all the MPI collective operations and aborting. >>>> >>>> You shouldn't need to manually select your coll module -- OMPI should >>>> automatically select the right collective module for you. E.g., if all >>>> procs are local on a single machine and sm has a matching implementation >>>> for that MPI collective operation, it'll be used. >>>> >>>> >>>> >>>> On Jul 3, 2012, at 2:48 PM, Juan Antonio Rico Gallego wrote: >>>> >>>>> Output is: >>>>> >>>>> [Metropolis-01:15355] hwloc:base:get_topology >>>>> [Metropolis-01:15355] hwloc:base: no cpus specified - using root >>>>> available cpuset >>>>> >>>>> ======================== JOB MAP ======================== >>>>> >>>>> Data for node: Metropolis-01 Num procs: 2 >>>>> Process OMPI jobid: [59809,1] App: 0 Process rank: 0 >>>>> Process OMPI jobid: [59809,1] App: 0 Process rank: 1 >>>>> >>>>> ============================================================= >>>>> [Metropolis-01:15356] locality: CL:CU:N:B >>>>> [Metropolis-01:15356] hwloc:base: get available cpus >>>>> [Metropolis-01:15356] hwloc:base:get_available_cpus first time - >>>>> filtering cpus >>>>> [Metropolis-01:15356] hwloc:base: no cpus specified - using root >>>>> available cpuset >>>>> [Metropolis-01:15356] hwloc:base:get_available_cpus root object >>>>> [Metropolis-01:15357] locality: CL:CU:N:B >>>>> [Metropolis-01:15357] hwloc:base: get available cpus >>>>> [Metropolis-01:15357] hwloc:base:get_available_cpus first time - >>>>> filtering cpus >>>>> [Metropolis-01:15357] hwloc:base: no cpus specified - using root >>>>> available cpuset >>>>> [Metropolis-01:15357] hwloc:base:get_available_cpus root object >>>>> [Metropolis-01:15356] hwloc:base:get_nbojbs computed data 0 of NUMANode:0 >>>>> [Metropolis-01:15357] hwloc:base:get_nbojbs computed data 0 of NUMANode:0 >>>>> >>>>> >>>>> Regards, >>>>> Juan A. Rico >>>>> _______________________________________________ >>>>> devel mailing list >>>>> de...@open-mpi.org >>>>> http://www.open-mpi.org/mailman/listinfo.cgi/devel >>>> >>>> >>>> -- >>>> Jeff Squyres >>>> jsquy...@cisco.com >>>> For corporate legal information go to: >>>> http://www.cisco.com/web/about/doing_business/legal/cri/ >>>> >>>> >>>> _______________________________________________ >>>> devel mailing list >>>> de...@open-mpi.org >>>> http://www.open-mpi.org/mailman/listinfo.cgi/devel >>> >>> >>> _______________________________________________ >>> devel mailing list >>> de...@open-mpi.org >>> http://www.open-mpi.org/mailman/listinfo.cgi/devel >> >> >> _______________________________________________ >> devel mailing list >> de...@open-mpi.org >> http://www.open-mpi.org/mailman/listinfo.cgi/devel > > > _______________________________________________ > devel mailing list > de...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/devel
