glad to hear that. However, since we are also having the problem with the lustre-fs module for static builds, I think it would still make sense to disable fs/lustre/ for 1.7.0
Edgar On 10/30/2012 12:34 PM, Ralph Castain wrote: > I hate odin :-( > > FWIW: it all works fine today, no matter how I configure it. No earthly idea > what happened. > > Ignore these droids.... > > > On Oct 30, 2012, at 7:28 AM, Edgar Gabriel <gabr...@cs.uh.edu> wrote: > >> ok, so a couple of things. >> >> I still think it is the same issue that I observed 1-2 days ago. Could >> you try to remove the fs/lustre component from your compilation, e.g. by >> adding an .ompi_ignore file into that directory, and see whether this >> fixes the issue? >> >> I tried on my machine (no lustre, no ib) compilations with >> --disable-mpi-io *or* --disable-io-romio, and both worked correctly and >> I could run things. Note, that the flags are truly different meanwhile, >> since the second flag is now equivalent to --enable-mca-no-build=io:romio >> The first flag disables the io, fcoll, fs and sharedfp frameworks. >> (prior to ompio they had basically the same effect). >> >> In your particular case this means, that you disabled romio, but the >> entire ompio stack is still compiled, and error must come from that >> portion. If my suspecion is correct, it is still liblustre >> messing around with the malloc hooks, and that causes the stack frame to >> be completely broken. I thought I fixed that since we did not have the >> issue on trunk, but we did observe that in the 1.7 branch 1-2 days back >> as well, and I was looking into that. >> >> That being said, there is another malloc-hooks issue that makes me a bit >> nervous. The compilation of the otf stuff produced a ton of warnings on >> my machine with gcc4.6.2 also with respect to the _malloc_hooks and >> _realloc_hooks. Not sure whether this contributed to the problem as >> well, just thought I bring it up since we seem to have a corrupted stack >> frame problem. >> >> Thanks >> Edgar >> >> >> On 10/30/2012 8:29 AM, Edgar Gabriel wrote: >>> ok, I'll look into this. I noticed a problem with static builds on >>> lustre file systems recently, and I was wandering whether its the same >>> issue or not. But I'll check what's going on. >>> >>> THanks >>> Edgar >>> >>> On 10/30/2012 7:22 AM, Ralph Castain wrote: >>>> No to Lustre, and I didn't build static >>>> >>>> I'm not sure what, if any, parallel file system might be present. In the >>>> case that works, I just built with no configure args other than prefix. >>>> ompi_info shows both romio and mpio built, but nothing more about what >>>> support they built internally. >>>> >>>> >>>> On Oct 30, 2012, at 4:14 AM, Edgar Gabriel <gabr...@cs.uh.edu> wrote: >>>> >>>>> Ralph, >>>>> >>>>> just out curiosity: is there a lustre file system on the machine and is >>>>> this a static build ? >>>>> >>>>> Thanks >>>>> Edgar >>>>> >>>>> On 10/29/2012 9:17 PM, Ralph Castain wrote: >>>>>> Hmmm...I added that directory and tried this on odin (which is an >>>>>> IB-based machine). Any MPI proc segfaults: >>>>>> >>>>>> Core was generated by `./hello'. >>>>>> Program terminated with signal 11, Segmentation fault. >>>>>> w#0 _sysio_p_validate (pno=0x0, intnt=0x0, path=0x0) at src/inode.c:574 >>>>>> 574 src/inode.c: No such file or directory. >>>>>> in src/inode.c >>>>>> (gdb) where >>>>>> #0 _sysio_p_validate (pno=0x0, intnt=0x0, path=0x0) at src/inode.c:574 >>>>>> #1 0x00002aaaabd3f3e9 in _sysio_path_walk (parent=0x0, >>>>>> nd=0x7fffffffd8e0) at src/namei.c:216 >>>>>> #2 0x00002aaaabd3faad in _sysio_namei (parent=0x0, path=<value >>>>>> optimized out>, flags=0, intnt=0x7fffffffd950, pnop=0x7fffffffd970) at >>>>>> src/namei.c:505 >>>>>> #3 0x00002aaaabd3fd98 in open (path=0x2aaaac24280f >>>>>> "/sys/devices/system/node", flags=<value optimized out>) at >>>>>> src/open.c:179 >>>>>> #4 0x00002aaaabd43d5b in opendir (name=0x2aaaac24280f >>>>>> "/sys/devices/system/node") at src/stddir.c:60 >>>>>> #5 0x00002aaaac241825 in numa_max_node () from /usr/lib64/libnuma.so.1 >>>>>> #6 0x00002aaaac241d13 in numa_init () from /usr/lib64/libnuma.so.1 >>>>>> #7 0x00002aaaaaab845b in call_init () from /lib64/ld-linux-x86-64.so.2 >>>>>> #8 0x00002aaaaaab8565 in _dl_init_internal () from >>>>>> /lib64/ld-linux-x86-64.so.2 >>>>>> #9 0x00002aaaaaaabaaa in _dl_start_user () from >>>>>> /lib64/ld-linux-x86-64.so.2 >>>>>> #10 0x0000000000000001 in ?? () >>>>>> #11 0x00007fffffffe03c in ?? () >>>>>> #12 0x0000000000000000 in ?? () >>>>>> >>>>>> I got the same thing whether I excluded openib or not. I then ran on my >>>>>> Linux cluster, which doesn't have IB at all - and it ran fine. Also runs >>>>>> clean on the Mac. However, in both those cases, I had left IO romio >>>>>> enabled. >>>>>> >>>>>> Now on odin, I always disable-io-romio. So I tried deliberately enabling >>>>>> it, and everything works. So this appears to be something that the IO >>>>>> work has broken. >>>>>> >>>>>> Edgar: can you please fix --disable-io-romio? >>>>>> >>>>>> Thanks >>>>>> Ralph >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> On Oct 29, 2012, at 11:55 AM, Edgar Gabriel <gabr...@cs.uh.edu> wrote: >>>>>> >>>>>>> I'm sorry to add one more thing to the list, but beyond this file, it >>>>>>> looks like also the entire ompi/mca/common/verbs/ directory is also >>>>>>> missing in the 1.7 branch, but is required to compile the bcoll >>>>>>> framework. It is there in the trunk, but missing in the 1.7 branch... >>>>>>> >>>>>>> Thanks >>>>>>> Edgar >>>>>>> >>>>>>> >>>>>>> On 10/26/2012 5:31 PM, Ralph Castain wrote: >>>>>>>> Okay, I'll fix for tonights tarball. >>>>>>>> >>>>>>>> Thanks! >>>>>>>> >>>>>>>> On Oct 26, 2012, at 3:28 PM, "Shamis, Pavel" <sham...@ornl.gov> wrote: >>>>>>>> >>>>>>>>> There is a bug in makefile. The file existing in svn, but it is not >>>>>>>>> listed in the Makefile.am. As a result, it wasn't pulled to the >>>>>>>>> tarball. >>>>>>>>> >>>>>>>>> Pavel (Pasha) Shamis >>>>>>>>> --- >>>>>>>>> Computer Science Research Group >>>>>>>>> Computer Science and Math Division >>>>>>>>> Oak Ridge National Laboratory >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> On Oct 26, 2012, at 2:33 PM, Edgar Gabriel wrote: >>>>>>>>> >>>>>>>>> we have trouble compiling the 1.7 series on a machine in Dresden. >>>>>>>>> Specifically, we receive an error message when compiling the >>>>>>>>> bcol/iboffload component (other infiniband components compile fine). >>>>>>>>> >>>>>>>>> Any idea/suggestions what we might be doing wrong or what to look for? >>>>>>>>> >>>>>>>>> make[2]: Entering directory >>>>>>>>> `/home/h2/gabriel/openmpi-1.7rc4/ompi/mca/bcol/iboffload' >>>>>>>>> CC bcol_iboffload_module.lo >>>>>>>>> CC bcol_iboffload_mca.lo >>>>>>>>> CC bcol_iboffload_endpoint.lo >>>>>>>>> CC bcol_iboffload_frag.lo >>>>>>>>> In file included from bcol_iboffload_frag.c:16:0: >>>>>>>>> bcol_iboffload.h:46:36: fatal error: bcol_iboffload_qp_info.h: No such >>>>>>>>> file or directory >>>>>>>>> compilation terminated. >>>>>>>>> make[2]: *** [bcol_iboffload_frag.lo] Error 1 >>>>>>>>> make[2]: *** Waiting for unfinished jobs.... >>>>>>>>> In file included from bcol_iboffload_mca.c:18:0: >>>>>>>>> bcol_iboffload.h:46:36: fatal error: bcol_iboffload_qp_info.h: No such >>>>>>>>> file or directory >>>>>>>>> compilation terminated. >>>>>>>>> make[2]: *** [bcol_iboffload_mca.lo] Error 1 >>>>>>>>> In file included from bcol_iboffload_endpoint.c:23:0: >>>>>>>>> bcol_iboffload.h:46:36: fatal error: bcol_iboffload_qp_info.h: No such >>>>>>>>> file or directory >>>>>>>>> compilation terminated. >>>>>>>>> make[2]: *** [bcol_iboffload_endpoint.lo] Error 1 >>>>>>>>> In file included from bcol_iboffload_module.c:39:0: >>>>>>>>> bcol_iboffload.h:46:36: fatal error: bcol_iboffload_qp_info.h: No such >>>>>>>>> file or directory >>>>>>>>> compilation terminated. >>>>>>>>> make[2]: *** [bcol_iboffload_module.lo] Error 1 >>>>>>>>> make[2]: Leaving directory >>>>>>>>> `/home/h2/gabriel/openmpi-1.7rc4/ompi/mca/bcol/iboffload' >>>>>>>>> make[1]: *** [all-recursive] Error 1 >>>>>>>>> make[1]: Leaving directory `/home/h2/gabriel/openmpi-1.7rc4/ompi' >>>>>>>>> make: *** [all-recursive] Error 1 >>>>>>>>> >>>>>>>>> Thanks >>>>>>>>> Edgar >>>>>>>>> >>>>>>>>> -- >>>>>>>>> Edgar Gabriel >>>>>>>>> Associate Professor >>>>>>>>> Parallel Software Technologies Lab http://pstl.cs.uh.edu >>>>>>>>> Department of Computer Science University of Houston >>>>>>>>> Philip G. Hoffman Hall, Room 524 Houston, TX-77204, USA >>>>>>>>> Tel: +1 (713) 743-3857 Fax: +1 (713) 743-3335 >>>>>>>>> >>>>>>>>> <signature.asc>_______________________________________________ >>>>>>>>> devel mailing list >>>>>>>>> de...@open-mpi.org<mailto:de...@open-mpi.org> >>>>>>>>> http://www.open-mpi.org/mailman/listinfo.cgi/devel >>>>>>>>> >>>>>>>>> >>>>>>>>> _______________________________________________ >>>>>>>>> devel mailing list >>>>>>>>> de...@open-mpi.org >>>>>>>>> http://www.open-mpi.org/mailman/listinfo.cgi/devel >>>>>>>> >>>>>>>> >>>>>>>> _______________________________________________ >>>>>>>> devel mailing list >>>>>>>> de...@open-mpi.org >>>>>>>> http://www.open-mpi.org/mailman/listinfo.cgi/devel >>>>>>>> >>>>>>> >>>>>>> -- >>>>>>> Edgar Gabriel >>>>>>> Associate Professor >>>>>>> Parallel Software Technologies Lab http://pstl.cs.uh.edu >>>>>>> Department of Computer Science University of Houston >>>>>>> Philip G. Hoffman Hall, Room 524 Houston, TX-77204, USA >>>>>>> Tel: +1 (713) 743-3857 Fax: +1 (713) 743-3335 >>>>>>> >>>>>>> _______________________________________________ >>>>>>> devel mailing list >>>>>>> de...@open-mpi.org >>>>>>> http://www.open-mpi.org/mailman/listinfo.cgi/devel >>>>>> >>>>>> >>>>>> _______________________________________________ >>>>>> devel mailing list >>>>>> de...@open-mpi.org >>>>>> http://www.open-mpi.org/mailman/listinfo.cgi/devel >>>>>> >>>>> >>>>> -- >>>>> Edgar Gabriel >>>>> Associate Professor >>>>> Parallel Software Technologies Lab http://pstl.cs.uh.edu >>>>> Department of Computer Science University of Houston >>>>> Philip G. Hoffman Hall, Room 524 Houston, TX-77204, USA >>>>> Tel: +1 (713) 743-3857 Fax: +1 (713) 743-3335 >>>>> >>>>> _______________________________________________ >>>>> devel mailing list >>>>> de...@open-mpi.org >>>>> http://www.open-mpi.org/mailman/listinfo.cgi/devel >>>> >>>> >>>> _______________________________________________ >>>> devel mailing list >>>> de...@open-mpi.org >>>> http://www.open-mpi.org/mailman/listinfo.cgi/devel >>>> >>> >>> >>> >>> _______________________________________________ >>> devel mailing list >>> de...@open-mpi.org >>> http://www.open-mpi.org/mailman/listinfo.cgi/devel >>> >> >> -- >> Edgar Gabriel >> Associate Professor >> Parallel Software Technologies Lab http://pstl.cs.uh.edu >> Department of Computer Science University of Houston >> Philip G. Hoffman Hall, Room 524 Houston, TX-77204, USA >> Tel: +1 (713) 743-3857 Fax: +1 (713) 743-3335 >> >> _______________________________________________ >> devel mailing list >> de...@open-mpi.org >> http://www.open-mpi.org/mailman/listinfo.cgi/devel > > > _______________________________________________ > devel mailing list > de...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/devel > -- Edgar Gabriel Associate Professor Parallel Software Technologies Lab http://pstl.cs.uh.edu Department of Computer Science University of Houston Philip G. Hoffman Hall, Room 524 Houston, TX-77204, USA Tel: +1 (713) 743-3857 Fax: +1 (713) 743-3335
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