I had originally installed v1.6.3 in /usr/local but had problems with it hanging on some commands. The installation of the development version in the same directory probably is the reason for the errors I am getting. I will do a clean install in a different directory. Thanks for your help.
On Dec 23, 2012, at 5:28 PM, Ralph Castain <r...@open-mpi.org> wrote: > Wow - strange. How was this configured? > > Something clearly is messed up as there is no such thing as a "basic" grpcomm > module, or an ess "slurmd" module, etc. any more. My best guess is that you > wound up installing this on top of an existing OMPI install, and have now > created a massive library confusion problem. > > Try configuring it --with-prefix=<foo>, where foo is under your home > directory. This will provide a clean place to install without confusion. Then > put that location at the front of your path and ld_library_path - I suspect > things will be okay from there. > > > On Dec 23, 2012, at 1:43 PM, R C <rec...@gmail.com> wrote: > >> I put /usr/local/lib at the beginning of LD_LIBRARY_PATH and I get: >> $ ompi_info >> [RCAsus1:20105] mca: base: component_find: unable to open >> /usr/local/lib/openmpi/mca_errmgr_default: >> /usr/local/lib/openmpi/mca_errmgr_default.so: undefined symbol: >> orte_errmgr_base_output (ignored) >> [RCAsus1:20105] mca: base: component_find: unable to open >> /usr/local/lib/openmpi/mca_ess_slurmd: >> /usr/local/lib/openmpi/mca_ess_slurmd.so: undefined symbol: orte_nid_t_class >> (ignored) >> [RCAsus1:20105] mca: base: component_find: unable to open >> /usr/local/lib/openmpi/mca_grpcomm_basic: >> /usr/local/lib/openmpi/mca_grpcomm_basic.so: undefined symbol: >> opal_profile_file (ignored) >> [RCAsus1:20105] mca: base: component_find: unable to open >> /usr/local/lib/openmpi/mca_routed_cm: >> /usr/local/lib/openmpi/mca_routed_cm.so: undefined symbol: >> orte_message_event_t_class (ignored) >> [RCAsus1:20105] mca: base: component_find: unable to open >> /usr/local/lib/openmpi/mca_routed_linear: >> /usr/local/lib/openmpi/mca_routed_linear.so: undefined symbol: >> orte_message_event_t_class (ignored) >> Package: Open MPI rc@RCAsus1 Distribution >> Open MPI: 1.9a1r27719 >> Open MPI repo revision: r27719 >> Open MPI release date: Unreleased developer copy >> Open RTE: 1.9a1r27719 >> >> >> and now when I try: >>> $ mpicc -o hw hello.c >> >> it seems to compile, but from: >> $mpirun -np 4 hw >> RCAsus1:26668] mca: base: component_find: unable to open >> /usr/local/lib/openmpi/mca_ess_slurmd: >> /usr/local/lib/openmpi/mca_ess_slurmd.so: undefined symbol: orte_nid_t_class >> (ignored) >> [RCAsus1:26668] mca: base: component_find: unable to open >> /usr/local/lib/openmpi/mca_errmgr_default: >> /usr/local/lib/openmpi/mca_errmgr_default.so: undefined symbol: >> orte_errmgr_base_output (ignored) >> [RCAsus1:26668] mca: base: component_find: unable to open >> /usr/local/lib/openmpi/mca_routed_cm: >> /usr/local/lib/openmpi/mca_routed_cm.so: undefined symbol: >> orte_message_event_t_class (ignored) >> [RCAsus1:26668] mca: base: component_find: unable to open >> /usr/local/lib/openmpi/mca_routed_linear: >> /usr/local/lib/openmpi/mca_routed_linear.so: undefined symbol: >> orte_message_event_t_class (ignored) >> [RCAsus1:26668] mca: base: component_find: unable to open >> /usr/local/lib/openmpi/mca_grpcomm_basic: >> /usr/local/lib/openmpi/mca_grpcomm_basic.so: undefined symbol: >> opal_profile_file (ignored) >> [RCAsus1:26668] *** Process received signal *** >> [RCAsus1:26668] Signal: Segmentation fault (11) >> [RCAsus1:26668] Signal code: (128) >> [RCAsus1:26668] Failing at address: (nil) >> [RCAsus1:26668] [ 0] /lib/x86_64-linux-gnu/libpthread.so.0(+0xfcb0) >> [0x7f0e31d54cb0] >> [RCAsus1:26668] [ 1] >> /usr/local/lib/openmpi/mca_rmaps_load_balance.so(+0xca8) [0x7f0e2f720ca8] >> [RCAsus1:26668] [ 2] >> /usr/local/lib/libopen-rte.so.0(orte_rmaps_base_map_job+0x1ba) >> [0x7f0e3226b09a] >> [RCAsus1:26668] [ 3] >> /usr/local/lib/libopen-pal.so.0(opal_libevent2019_event_base_loop+0x626) >> [0x7f0e31fb97e6] >> [RCAsus1:26668] [ 4] /usr/local/lib/libopen-pal.so.0(opal_progress+0xb3) >> [0x7f0e31f87483] >> [RCAsus1:26668] [ 5] mpirun(orterun+0x10fb) [0x404b8d] >> [RCAsus1:26668] [ 6] mpirun(main+0x20) [0x4036ec] >> [RCAsus1:26668] [ 7] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) >> [0x7f0e319a776d] >> [RCAsus1:26668] [ 8] mpirun() [0x4035e9] >> [RCAsus1:26668] *** End of error message *** >> Segmentation fault (core dumped) >> >> >> >> 504:5 $ mpicc -o hw hello.c >> [04:37 PM][rc@RCAsus1] [~/Dropbox/tst] >> 505:6 $ mpirun -np 4 hw >> [RCAsus1:26668] mca: base: component_find: unable to open >> /usr/local/lib/openmpi/mca_ess_slurmd: >> /usr/local/lib/openmpi/mca_ess_slurmd.so: undefined symbol: orte_nid_t_class >> (ignored) >> [RCAsus1:26668] mca: base: component_find: unable to open >> /usr/local/lib/openmpi/mca_errmgr_default: >> /usr/local/lib/openmpi/mca_errmgr_default.so: undefined symbol: >> orte_errmgr_base_output (ignored) >> [RCAsus1:26668] mca: base: component_find: unable to open >> /usr/local/lib/openmpi/mca_routed_cm: >> /usr/local/lib/openmpi/mca_routed_cm.so: undefined symbol: >> orte_message_event_t_class (ignored) >> [RCAsus1:26668] mca: base: component_find: unable to open >> /usr/local/lib/openmpi/mca_routed_linear: >> /usr/local/lib/openmpi/mca_routed_linear.so: undefined symbol: >> orte_message_event_t_class (ignored) >> [RCAsus1:26668] mca: base: component_find: unable to open >> /usr/local/lib/openmpi/mca_grpcomm_basic: >> /usr/local/lib/openmpi/mca_grpcomm_basic.so: undefined symbol: >> opal_profile_file (ignored) >> [RCAsus1:26668] *** Process received signal *** >> [RCAsus1:26668] Signal: Segmentation fault (11) >> [RCAsus1:26668] Signal code: (128) >> [RCAsus1:26668] Failing at address: (nil) >> [RCAsus1:26668] [ 0] /lib/x86_64-linux-gnu/libpthread.so.0(+0xfcb0) >> [0x7f0e31d54cb0] >> [RCAsus1:26668] [ 1] >> /usr/local/lib/openmpi/mca_rmaps_load_balance.so(+0xca8) [0x7f0e2f720ca8] >> [RCAsus1:26668] [ 2] >> /usr/local/lib/libopen-rte.so.0(orte_rmaps_base_map_job+0x1ba) >> [0x7f0e3226b09a] >> [RCAsus1:26668] [ 3] >> /usr/local/lib/libopen-pal.so.0(opal_libevent2019_event_base_loop+0x626) >> [0x7f0e31fb97e6] >> [RCAsus1:26668] [ 4] /usr/local/lib/libopen-pal.so.0(opal_progress+0xb3) >> [0x7f0e31f87483] >> [RCAsus1:26668] [ 5] mpirun(orterun+0x10fb) [0x404b8d] >> [RCAsus1:26668] [ 6] mpirun(main+0x20) [0x4036ec] >> [RCAsus1:26668] [ 7] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) >> [0x7f0e319a776d] >> [RCAsus1:26668] [ 8] mpirun() [0x4035e9] >> [RCAsus1:26668] *** End of error message *** >> Segmentation fault (core dumped) >> >> >> Thanks for your assistance. >> >> >> >> On Sun, Dec 23, 2012 at 4:08 PM, Ralph Castain <r...@open-mpi.org> wrote: >> Do you have your LD_LIBRARY_PATH set correctly? You want your prefix >> location to be at the front so you don't pickup something from the default >> system installation. >> >> On Dec 23, 2012, at 12:39 PM, R C <rec...@gmail.com> wrote: >> >>> Thanks, r27719 compiles but I get an error when I try: >>> $/usr/local/bin/ompi_info >>> /usr/local/bin/ompi_info: symbol lookup error: /usr/local/bin/ompi_info: >>> undefined symbol: mca_fbtl_base_components_opened >>> >>> and when I tried to compile a test program: >>> $ mpicc -o hw hello.c >>> mpicc: Symbol `opal_show_help' has different size in shared object, >>> consider re-linking >>> >>> >>> >>> On Sun, Dec 23, 2012 at 2:55 PM, Ralph Castain <r...@open-mpi.org> wrote: >>> Sigh - sorry about that. Guess we'll have to feel our way down the various >>> tools. I've committed a fix that -should- resolve this for the rest of the >>> tools in the OMPI layer. Please let me know how it works for you. >>> >>> Ralph >>> >>> On Dec 23, 2012, at 10:56 AM, R C <rec...@gmail.com> wrote: >>> >>>> >>>> Thanks again for looking into this. >>>> With r27717, 'make all' gives me the error: >>>> >>>> Making all in tools/ompi_info >>>> make[2]: Entering directory >>>> `/home/rc/Downloads/ompi/objd/ompi/tools/ompi_info' >>>> CC ompi_info.o >>>> CC param.o >>>> ../../../../ompi/tools/ompi_info/param.c: In function >>>> ‘ompi_info_do_config’: >>>> ../../../../ompi/tools/ompi_info/param.c:238:17: warning: ignoring return >>>> value of ‘asprintf’, declared with attribute warn_unused_result >>>> [-Wunused-result] >>>> ../../../../ompi/tools/ompi_info/param.c:252:17: warning: ignoring return >>>> value of ‘asprintf’, declared with attribute warn_unused_result >>>> [-Wunused-result] >>>> ../../../../ompi/tools/ompi_info/param.c:259:17: warning: ignoring return >>>> value of ‘asprintf’, declared with attribute warn_unused_result >>>> [-Wunused-result] >>>> ../../../../ompi/tools/ompi_info/param.c:271:13: warning: ignoring return >>>> value of ‘asprintf’, declared with attribute warn_unused_result >>>> [-Wunused-result] >>>> ../../../../ompi/tools/ompi_info/param.c:274:13: warning: ignoring return >>>> value of ‘asprintf’, declared with attribute warn_unused_result >>>> [-Wunused-result] >>>> CC components.o >>>> ../../../../ompi/tools/ompi_info/components.c: In function >>>> ‘ompi_info_register_components’: >>>> ../../../../ompi/tools/ompi_info/components.c:106:17: warning: ignoring >>>> return value of ‘asprintf’, declared with attribute warn_unused_result >>>> [-Wunused-result] >>>> ../../../../ompi/tools/ompi_info/components.c:109:21: warning: ignoring >>>> return value of ‘asprintf’, declared with attribute warn_unused_result >>>> [-Wunused-result] >>>> ../../../../ompi/tools/ompi_info/components.c:113:21: warning: ignoring >>>> return value of ‘asprintf’, declared with attribute warn_unused_result >>>> [-Wunused-result] >>>> CC version.o >>>> ../../../../ompi/tools/ompi_info/version.c: In function >>>> ‘ompi_info_show_ompi_version’: >>>> ../../../../ompi/tools/ompi_info/version.c:125:13: warning: ignoring >>>> return value of ‘asprintf’, declared with attribute warn_unused_result >>>> [-Wunused-result] >>>> ../../../../ompi/tools/ompi_info/version.c:134:13: warning: ignoring >>>> return value of ‘asprintf’, declared with attribute warn_unused_result >>>> [-Wunused-result] >>>> ../../../../ompi/tools/ompi_info/version.c:137:13: warning: ignoring >>>> return value of ‘asprintf’, declared with attribute warn_unused_result >>>> [-Wunused-result] >>>> CCLD ompi_info >>>> /usr/bin/ld: version.o: undefined reference to symbol 'orte_info_type_orte' >>>> /usr/bin/ld: note: 'orte_info_type_orte' is defined in DSO >>>> /home/rc/Downloads/ompi/objd/orte/.libs/libopen-rte.so.0 so try adding it >>>> to the linker command line >>>> /home/rc/Downloads/ompi/objd/orte/.libs/libopen-rte.so.0: could not read >>>> symbols: Invalid operation >>>> collect2: error: ld returned 1 exit status >>>> make[2]: *** [ompi_info] Error 1 >>>> make[2]: Leaving directory >>>> `/home/rc/Downloads/ompi/objd/ompi/tools/ompi_info' >>>> make[1]: *** [all-recursive] Error 1 >>>> make[1]: Leaving directory `/home/rc/Downloads/ompi/objd/ompi' >>>> make: *** [all-recursive] Error 1 >>>> >> >> _______________________________________________ >> devel mailing list >> de...@open-mpi.org >> http://www.open-mpi.org/mailman/listinfo.cgi/devel > > _______________________________________________ > devel mailing list > de...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/devel
