Ralph, Again our results differ. I did NOT need the additional #include to link a simple test program. I am going to try on our XE6 shortly.
I suspect you are right about something in the configury being different. I am willing to try a few more nightly tarballs if somebody thinks they have the proper fix. -Paul On Fri, Jan 25, 2013 at 5:45 PM, Ralph Castain <r...@open-mpi.org> wrote: > > On Jan 25, 2013, at 5:12 PM, Paul Hargrove <phhargr...@lbl.gov> wrote: > > Ralph, > > Those are the result of the missing -lnuma that Nathan already identified > earlier as missing in BOTH 1.7 and trunk. > I see MORE missing symbols, which include ones from libxpmem and libugni. > > > Alright, let me try to be clearer. We are missing -lnuma as well as the > required include file - both are necessary to remove the issue. > > I find both the xpmem and ugni libraries *are* correctly included in both > 1.7 and trunk. It could be a case of finding them in the configury, but we > are finding them *and* correctly including them on the XE6. > > HTH > Ralph > > > -Paul > > > On Fri, Jan 25, 2013 at 4:59 PM, Ralph Castain <r...@open-mpi.org> wrote: > >> >> On Jan 25, 2013, at 4:53 PM, Ralph Castain <r...@open-mpi.org> wrote: >> > The repeated libs is something we obviously should fix, but all the >> libs are there - including lustre. I guess those were dropped due to the >> shared lib setting, so we probably should fix that in the platform file. >> > >> > Perhaps that is the cause of Nathan's issue? shrug...regardless, apps >> build and run just fine using mpicc for me. >> >> Correction - turns out I misspoke. I find apps *don't* build correctly >> with this setup: >> >> mpicc -g hello_c.c -o hello_c >> /usr/aprojects/hpctools/rhc/build/lib/libopen-pal.a(topology-linux.o): In >> function `hwloc_linux_set_area_membind': >> /lscratch1/rcastain/openmpi-1.9a1/opal/mca/hwloc/hwloc151/hwloc/src/topology-linux.c:1116: >> undefined reference to `mbind' >> /lscratch1/rcastain/openmpi-1.9a1/opal/mca/hwloc/hwloc151/hwloc/src/topology-linux.c:1135: >> undefined reference to `mbind' >> /usr/aprojects/hpctools/rhc/build/lib/libopen-pal.a(topology-linux.o): In >> function `hwloc_linux_get_area_membind': >> /lscratch1/rcastain/openmpi-1.9a1/opal/mca/hwloc/hwloc151/hwloc/src/topology-linux.c:1337: >> undefined reference to `get_mempolicy' >> /usr/aprojects/hpctools/rhc/build/lib/libopen-pal.a(topology-linux.o): In >> function `hwloc_linux_find_kernel_max_numnodes': >> /lscratch1/rcastain/openmpi-1.9a1/opal/mca/hwloc/hwloc151/hwloc/src/topology-linux.c:1239: >> undefined reference to `get_mempolicy' >> /usr/aprojects/hpctools/rhc/build/lib/libopen-pal.a(topology-linux.o): In >> function `hwloc_linux_set_thisthread_membind': >> /lscratch1/rcastain/openmpi-1.9a1/opal/mca/hwloc/hwloc151/hwloc/src/topology-linux.c:1183: >> undefined reference to `set_mempolicy' >> /lscratch1/rcastain/openmpi-1.9a1/opal/mca/hwloc/hwloc151/hwloc/src/topology-linux.c:1194: >> undefined reference to `migrate_pages' >> /lscratch1/rcastain/openmpi-1.9a1/opal/mca/hwloc/hwloc151/hwloc/src/topology-linux.c:1206: >> undefined reference to `set_mempolicy' >> /usr/aprojects/hpctools/rhc/build/lib/libopen-pal.a(topology-linux.o): In >> function `hwloc_linux_get_thisthread_membind': >> /lscratch1/rcastain/openmpi-1.9a1/opal/mca/hwloc/hwloc151/hwloc/src/topology-linux.c:1284: >> undefined reference to `get_mempolicy' >> /usr/aprojects/hpctools/rhc/build/lib/libopen-pal.a(topology-linux.o): In >> function `hwloc_linux_find_kernel_max_numnodes': >> /lscratch1/rcastain/openmpi-1.9a1/opal/mca/hwloc/hwloc151/hwloc/src/topology-linux.c:1239: >> undefined reference to `get_mempolicy' >> collect2: ld returned 1 exit status >> make: *** [hello_c] Error 1 >> >> So it looks like hwloc is borked when built static. >> >> Sigh >> Ralph >> >> >> _______________________________________________ >> devel mailing list >> de...@open-mpi.org >> http://www.open-mpi.org/mailman/listinfo.cgi/devel >> > > > > -- > Paul H. Hargrove phhargr...@lbl.gov > Future Technologies Group > Computer and Data Sciences Department Tel: +1-510-495-2352 > Lawrence Berkeley National Laboratory Fax: +1-510-486-6900 > _______________________________________________ > devel mailing list > de...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/devel > > > > _______________________________________________ > devel mailing list > de...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/devel > -- Paul H. Hargrove phhargr...@lbl.gov Future Technologies Group Computer and Data Sciences Department Tel: +1-510-495-2352 Lawrence Berkeley National Laboratory Fax: +1-510-486-6900
