Hi, Sorry about that. the fix is here: r29223 Regards M
On Fri, Sep 20, 2013 at 7:32 PM, Jeff Squyres (jsquyres) <jsquy...@cisco.com > wrote: > Mellanox -- > > Please remove all uses of bzero. memset is the portable way to go here. > > > > On Sep 20, 2013, at 12:30 PM, "David Goodell (dgoodell)" < > dgood...@cisco.com> wrote: > > > "bzero" should be avoided for maximum portability. Just use "memset" > instead. Even older versions of GCC know how to spot the 0 constant and > substitute the right compiler intrinsic(s), assuming they are available for > the target platform. > > > > http://pubs.opengroup.org/onlinepubs/009695399/functions/bzero.html > > > > -Dave > > > > On Sep 19, 2013, at 8:44 AM, Ralph Castain <r...@open-mpi.org> wrote: > > > >> Can you please do a "man bzero" and tell us what include file it says > we need? > >> > >> > >> On Sep 19, 2013, at 3:33 AM, Siegmar Gross < > siegmar.gr...@informatik.hs-fulda.de> wrote: > >> > >>> Hello Josh, > >>> > >>> I just tried to compile openmpi-1.9a1r29209 with gcc-4.8.0 and get the > >>> following error on Solaris sparc and Solars x86_64. > >>> > >>> sunpc1 openmpi-1.9a1r29209-SunOS.x86_64.64_gcc 24 tail -14 > log.make.SunOS.x86_64.64_gcc > >>> make[2]: Entering directory > >>> > `/export2/src/openmpi-1.9/openmpi-1.9a1r29209-SunOS.x86_64.64_gcc/oshmem' > >>> CC op/op.lo > >>> CC proc/proc.lo > >>> ../../openmpi-1.9a1r29209/oshmem/proc/proc.c: In function > 'oshmem_proc_construct': > >>> ../../openmpi-1.9a1r29209/oshmem/proc/proc.c:48:5: error: implicit > >>> declaration of function 'bzero' [-Werror=implicit-function-declaration] > >>> bzero(proc->proc_endpoints, sizeof(proc->proc_endpoints)); > >>> ^ > >>> ../../openmpi-1.9a1r29209/oshmem/proc/proc.c:48:5: error: incompatible > implicit > >>> declaration of built-in function 'bzero' [-Werror] > >>> cc1: all warnings being treated as errors > >>> make[2]: *** [proc/proc.lo] Error 1 > >>> make[2]: Leaving directory > >>> > `/export2/src/openmpi-1.9/openmpi-1.9a1r29209-SunOS.x86_64.64_gcc/oshmem' > >>> make[1]: *** [all-recursive] Error 1 > >>> make[1]: Leaving directory > >>> > `/export2/src/openmpi-1.9/openmpi-1.9a1r29209-SunOS.x86_64.64_gcc/oshmem' > >>> make: *** [all-recursive] Error 1 > >>> > >>> > >>> Kind regards > >>> > >>> Siegmar > >>> > >>> > >>> > >>> > >>>>> Try now, please. > >>>> > >>>> I can build openmpi-1.9a1r29209 with my Sun C compiler on my > platforms. > >>>> Thank you very much for your help! I can even use it on Linux and > >>>> I still get a Bus Error on Solaris, but that is a different problem. > >>>> I'm happy that I have at least one working platform again. > >>>> > >>>> Kind regards and thank you very much once more > >>>> > >>>> Siegmar > >>>> > >>>> > >>>> > >>>>> -----Original Message----- > >>>>> From: Siegmar Gross [mailto:siegmar.gr...@informatik.hs-fulda.de] > >>>>> Sent: Wednesday, September 18, 2013 6:32 AM > >>>>> To: de...@open-mpi.org > >>>>> Cc: siegmar.gr...@informatik.hs-fulda.de; Joshua Ladd > >>>>> Subject: RE: [OMPI users] Error in openmpi-1.9a1r29179 > >>>>> > >>>>> Hello Josh, > >>>>> > >>>>> thank you very much for your help. Unfortunately I have still a > problem to > >>>> build Open MPI. > >>>>> > >>>>>> I pushed a bunch of fixes, can you please try now. > >>>>> > >>>>> I tried to build /openmpi-1.9a1r29197 on my platforms and now I get > on all > >>>> platforms the following error. > >>>>> > >>>>> > >>>>> linpc1 openmpi-1.9a1r29197-Linux.x86_64.64_cc 117 tail -22 > >>>> log.make.Linux.x86_64.64_cc > >>>>> CC base/memheap_base_alloc.lo > >>>>> > "../../../../openmpi-1.9a1r29197/opal/include/opal/sys/amd64/atomic.h", line > >>>> 136: warning: parameter in inline asm statement unused: %3 > >>>> > "../../../../openmpi-1.9a1r29197/opal/include/opal/sys/amd64/atomic.h", line > >>>> 182: warning: parameter in inline asm statement unused: %2 > >>>> > "../../../../openmpi-1.9a1r29197/opal/include/opal/sys/amd64/atomic.h", line > >>>> 203: warning: parameter in inline asm statement unused: %2 > >>>> > "../../../../openmpi-1.9a1r29197/opal/include/opal/sys/amd64/atomic.h", line > >>>> 224: warning: parameter in inline asm statement unused: %2 > >>>> > "../../../../openmpi-1.9a1r29197/opal/include/opal/sys/amd64/atomic.h", line > >>>> 245: warning: parameter in inline asm statement unused: %2 > >>>> > "../../../../openmpi-1.9a1r29197/opal/include/opal/sys/atomic_impl.h", line > 167: > >>>> warning: statement not reached > >>>> > "../../../../openmpi-1.9a1r29197/opal/include/opal/sys/atomic_impl.h", line > 192: > >>>> warning: statement not reached > >>>> > "../../../../openmpi-1.9a1r29197/opal/include/opal/sys/atomic_impl.h", line > 217: > >>>> warning: statement not reached > >>>> "../../../../openmpi-1.9a1r29197/oshmem/mca/spml/spml.h", line 76: > warning: > >>>> anonymous union declaration > >>>> > "../../../../openmpi-1.9a1r29197/oshmem/mca/memheap/base/memheap_base_alloc.c", > >>>> line 112: warning: argument mismatch > >>>> > "../../../../openmpi-1.9a1r29197/oshmem/mca/memheap/base/memheap_base_alloc.c", > >>>> line 119: warning: argument mismatch > >>>> > "../../../../openmpi-1.9a1r29197/oshmem/mca/memheap/base/memheap_base_alloc.c", > >>>> line 124: warning: argument mismatch > >>>> > "../../../../openmpi-1.9a1r29197/oshmem/mca/memheap/base/memheap_base_alloc.c", > >>>> line 248: warning: pointer to void or function used in arithmetic > >>>> > "../../../../openmpi-1.9a1r29197/oshmem/mca/memheap/base/memheap_base_alloc.c", > >>>> line 286: syntax error before or at: | > >>>> > "../../../../openmpi-1.9a1r29197/oshmem/mca/memheap/base/memheap_base_alloc.c", > >>>> line 300: warning: pointer to void or function used in arithmetic > >>>>> cc: acomp failed for > >>>> > ../../../../openmpi-1.9a1r29197/oshmem/mca/memheap/base/memheap_base_alloc.c > >>>>> make[2]: *** [base/memheap_base_alloc.lo] Error 1 > >>>>> make[2]: Leaving directory > >>>> > `/export2/src/openmpi-1.9/openmpi-1.9a1r29197-Linux.x86_64.64_cc/oshmem/mca/memh > >>>> eap' > >>>>> make[1]: *** [all-recursive] Error 1 > >>>>> make[1]: Leaving directory > >>>> > `/export2/src/openmpi-1.9/openmpi-1.9a1r29197-Linux.x86_64.64_cc/oshmem' > >>>>> make: *** [all-recursive] Error 1 > >>>>> > >>>>> > >>>>> Kind regards > >>>>> > >>>>> Siegmar > >>>>> > >>>>> > >>>>> > >>>>> > >>>>>> -----Original Message----- > >>>>>> From: Jeff Squyres (jsquyres) [mailto:jsquy...@cisco.com] > >>>>>> Sent: Tuesday, September 17, 2013 6:37 AM > >>>>>> To: Siegmar Gross; Open MPI Developers List > >>>>>> Cc: Joshua Ladd > >>>>>> Subject: Re: [OMPI users] Error in openmpi-1.9a1r29179 > >>>>>> > >>>>>> ...moving over to the devel list... > >>>>>> > >>>>>> Dave and I looked at this during a break in the EuroMPI conference, > and > >>>> noticed several things: > >>>>>> > >>>>>> 1. Some of the shmem interfaces are functions (i.e., return > non-void) > >>>>>> and some are subroutines (i.e., return void). They're currently all > >>>>>> using a single macro > >>>>> to declare the interfaces, which assume functions. So this macro is > incorrect > >>>> for subroutines -- you really need 2 macros. > >>>>>> > >>>>>> 2. The macro name is OMPI_GENERATE_FORTRAN_BINDINGS -- why isn't is > >>>> SHMEM_GENERATE_FORTRAN_BINDINGS? > >>>>>> > >>>>>> 3. I notice that none of the Fortran interfaces are prototyped in > >>>>>> shmem.fh. Why not? A shmem person here in Madrid mentioned that > there > >>>>>> is supposed to be a > >>>>> shmem.fh file and a shmem modulefile. > >>>>>> > >>>>>> > >>>>>> On Sep 17, 2013, at 8:49 AM, Siegmar Gross > >>>> <siegmar.gr...@informatik.hs-fulda.de> wrote: > >>>>>> > >>>>>>> Hi, > >>>>>>> > >>>>>>> I tried to install openmpi-1.9a1r29179 on "openSuSE Linux 12.1", > >>>>>>> "Solaris 10 x86_64", and "Solaris 10 sparc" with "Sun C 5.12" in > >>>>>>> 64-bit mode. Unfortunately "make" breaks with the same error on all > >>>>>>> platforms. > >>>>>>> > >>>>>>> tail -15 log.make.Linux.x86_64.64_cc > >>>>>>> > >>>>>>> CCLD libshmem_c.la > >>>>>>> make[3]: Leaving directory > >>>> > `/export2/src/openmpi-1.9/openmpi-1.9a1r29179-Linux.x86_64.64_cc/oshmem/shmem/c' > >>>>>>> make[2]: Leaving directory > >>>> > `/export2/src/openmpi-1.9/openmpi-1.9a1r29179-Linux.x86_64.64_cc/oshmem/shmem/c' > >>>>>>> Making all in shmem/fortran > >>>>>>> make[2]: Entering directory > >>>> > `/export2/src/openmpi-1.9/openmpi-1.9a1r29179-Linux.x86_64.64_cc/oshmem/shmem/fo > >>>> rtran' > >>>>>>> CC start_pes_f.lo > >>>>>>> > "../../../../openmpi-1.9a1r29179/oshmem/shmem/fortran/start_pes_f.c" > >>>>>>> , line 16: void function cannot return value > >>>>>>> > "../../../../openmpi-1.9a1r29179/oshmem/shmem/fortran/start_pes_f.c" > >>>>>>> , line 16: void function cannot return value > >>>>>>> > "../../../../openmpi-1.9a1r29179/oshmem/shmem/fortran/start_pes_f.c" > >>>>>>> , line 16: void function cannot return value > >>>>>>> cc: acomp failed for > >>>>>>> ../../../../openmpi-1.9a1r29179/oshmem/shmem/fortran/start_pes_f.c > >>>>>>> make[2]: *** [start_pes_f.lo] Error 1 > >>>>>>> make[2]: Leaving directory > >>>> > `/export2/src/openmpi-1.9/openmpi-1.9a1r29179-Linux.x86_64.64_cc/oshmem/shmem/fo > >>>> rtran' > >>>>>>> make[1]: *** [all-recursive] Error 1 > >>>>>>> make[1]: Leaving directory > >>>> > `/export2/src/openmpi-1.9/openmpi-1.9a1r29179-Linux.x86_64.64_cc/oshmem' > >>>>>>> make: *** [all-recursive] Error 1 > >>>>>>> > >>>>>>> > >>>>>>> I configured with the following command. > >>>>>>> > >>>>>>> ../openmpi-1.9a1r29179/configure > >>>>>>> --prefix=/usr/local/openmpi-1.9_64_cc > >>>>>>> \ > >>>>>>> --libdir=/usr/local/openmpi-1.9_64_cc/lib64 \ > >>>>>>> --with-jdk-bindir=/usr/local/jdk1.7.0_07-64/bin \ > >>>>>>> --with-jdk-headers=/usr/local/jdk1.7.0_07-64/include \ > >>>>>>> JAVA_HOME=/usr/local/jdk1.7.0_07-64 \ LDFLAGS="-m64" \ CC="cc" > >>>>>>> CXX="CC" FC="f95" \ CFLAGS="-m64" CXXFLAGS="-m64 > -library=stlport4" > >>>>>>> FCFLAGS="-m64" \ CPP="cpp" CXXCPP="cpp" \ CPPFLAGS="" > CXXCPPFLAGS="" > >>>>>>> \ --enable-mpi-cxx \ --enable-cxx-exceptions \ --enable-mpi-java > >>>>>>> \ --enable-heterogeneous \ --enable-opal-multi-threads \ > >>>>>>> --enable-mpi-thread-multiple \ --with-threads=posix \ > >>>>>>> --with-hwloc=internal \ --without-verbs \ --without-udapl \ > >>>>>>> --without-sctp \ > >>>>>>> --with-wrapper-cflags=-m64 \ > >>>>>>> --enable-debug \ > >>>>>>> |& tee log.configure.$SYSTEM_ENV.$MACHINE_ENV.64_cc > >>>>>>> > >>>>>>> > >>>>>>> > >>>>>>> I would be grateful if somebody can fix the bug. Thank you very > much > >>>>>>> for any help in advance. > >>>>>>> > >>>>>>> > >>>>>>> Kind regards > >>>>>>> > >>>>>>> Siegmar > >>>>>>> > >>>>>>> > >>>>>>> _______________________________________________ > >>>>>>> users mailing list > >>>>>>> us...@open-mpi.org > >>>>>>> http://www.open-mpi.org/mailman/listinfo.cgi/users > >>>>>> > >>>>>> > >>>>>> -- > >>>>>> Jeff Squyres > >>>>>> jsquy...@cisco.com > >>>>>> For corporate legal information go to: > >>>>>> http://www.cisco.com/web/about/doing_business/legal/cri/ > >>>>>> > >>>>>> > >>>>> > >>>>> > >>>> > >>>> _______________________________________________ > >>>> devel mailing list > >>>> de...@open-mpi.org > >>>> http://www.open-mpi.org/mailman/listinfo.cgi/devel > >>> > >>> _______________________________________________ > >>> devel mailing list > >>> de...@open-mpi.org > >>> http://www.open-mpi.org/mailman/listinfo.cgi/devel > >> > >> _______________________________________________ > >> devel mailing list > >> de...@open-mpi.org > >> http://www.open-mpi.org/mailman/listinfo.cgi/devel > > > > _______________________________________________ > > devel mailing list > > de...@open-mpi.org > > http://www.open-mpi.org/mailman/listinfo.cgi/devel > > > -- > Jeff Squyres > jsquy...@cisco.com > For corporate legal information go to: > http://www.cisco.com/web/about/doing_business/legal/cri/ > > _______________________________________________ > devel mailing list > de...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/devel >
