It's probably being picked up from the PMI check and being added to the cppflags for components that call that .m4 (e.g., common/pmi). You might print out the cppflags being created in that script and see if that's the case.
The slurm check shouldn't be throwing anything into the global cppflags, and I don't think common/pmi calls the slurm .m4 check - at least, it probably shouldn't On Jul 11, 2014, at 11:57 AM, Mike Dubman <mi...@dev.mellanox.co.il> wrote: > I think the problem related to new version of SLURM which was upgraded on our > machines. > we had 2.6.6 now it is 14.03.4-2 > > $make V=1 > /bin/sh ../../../../libtool --tag=CC --mode=link gcc -std=gnu99 -DNDEBUG > -O3 -g -finline-functions -fno-strict-aliasing -pthread -version-info 2:2:1 > -export-dynamic -o libmca_common_pmi.la -rpath > /hpc/scrap/mtt/scratch/shmem/20140711_210002_6937_8974_sputnik7.vbench.com/installs/vyng/install/lib > common_pmi.lo -lpmi2 -lpmi -Wl,-rpath= -lrt -lnsl -lutil -lm > libtool: link: gcc -std=gnu99 -shared -fPIC -DPIC .libs/common_pmi.o > /usr/lib64/libpmi2.so /usr/lib64/libpmi.so -L/usr/lib64 > /usr/lib64/libslurm.so -ldl -lhwloc -lpthread -lrt -lnsl -lutil -lm -O3 > -pthread -Wl,-rpath= -pthread -Wl,-soname -Wl,libmca_common_pmi.so.1 -o > .libs/libmca_common_pmi.so.1.1.2 > /usr/bin/ld: cannot find -lhwloc > collect2: ld returned 1 exit status > make: *** [libmca_common_pmi.la] Error 1 > > The Makefile in opal/mca/common/pmi/Makefile has no references to "-lhwloc", > so it comes as dependancy from outside. > does it make sense? > > > this is a configure line used: > $ ./configure --with-platform=contrib/platform/mellanox/optimized > --with-fca=/opt/mellanox/fca > --with-mxm=/hpc/local/benchmarks/hpc-stack-gcc/install/mxm --enable-oshmem > --with-slurm --with-pmi --with-oshmem-param-check > --with-knem=/opt/knem-1.1.1.90mlnx > --prefix=/hpc/scrap/mtt/scratch/shmem/20140711_210002_6937_8974_sputnik7.vbench.com/installs/vyng/install > > > $ldd /usr/lib64/libpmi.so > linux-vdso.so.1 => (0x00007ffff7ffe000) > libslurm.so.27 => /usr/lib64/libslurm.so.27 (0x00007ffff7ac6000) > libpthread.so.0 => /lib64/libpthread.so.0 (0x00007ffff7897000) > libc.so.6 => /lib64/libc.so.6 (0x00007ffff7504000) > libdl.so.2 => /lib64/libdl.so.2 (0x00007ffff7300000) > libhwloc.so.5 => /usr/lib64/libhwloc.so.5 (0x00007ffff70d7000) > /lib64/ld-linux-x86-64.so.2 (0x0000003d9de00000) > libm.so.6 => /lib64/libm.so.6 (0x00007ffff6e53000) > libnuma.so.1 => /usr/lib64/libnuma.so.1 (0x00007ffff6c4a000) > libpci.so.3 => /lib64/libpci.so.3 (0x00007ffff6a3d000) > libxml2.so.2 => /usr/lib64/libxml2.so.2 (0x00007ffff66eb000) > libresolv.so.2 => /lib64/libresolv.so.2 (0x00007ffff64d1000) > libz.so.1 => /lib64/libz.so.1 (0x00007ffff62ba000) > mtt@sputnik7 > /hpc/scrap/mtt/scratch/shmem/20140711_210002_6937_8974_sputnik7.vbench.com/mpi-install/NoDd/src/ompi-vendor.git > $ldd /usr/lib64/libslurm.so > linux-vdso.so.1 => (0x00007ffff7ffe000) > libdl.so.2 => /lib64/libdl.so.2 (0x00007ffff7ab6000) > libhwloc.so.5 => /usr/lib64/libhwloc.so.5 (0x00007ffff788d000) > libpthread.so.0 => /lib64/libpthread.so.0 (0x00007ffff7670000) > libc.so.6 => /lib64/libc.so.6 (0x00007ffff72dd000) > /lib64/ld-linux-x86-64.so.2 (0x0000003d9de00000) > libm.so.6 => /lib64/libm.so.6 (0x00007ffff7058000) > libnuma.so.1 => /usr/lib64/libnuma.so.1 (0x00007ffff6e4f000) > libpci.so.3 => /lib64/libpci.so.3 (0x00007ffff6c43000) > libxml2.so.2 => /usr/lib64/libxml2.so.2 (0x00007ffff68f0000) > libresolv.so.2 => /lib64/libresolv.so.2 (0x00007ffff66d6000) > libz.so.1 => /lib64/libz.so.1 (0x00007ffff64c0000) > > > > > > > On Thu, Jul 10, 2014 at 6:53 PM, Nathan Hjelm <hje...@lanl.gov> wrote: > Nope, just added a missing file to the tarball. > > -Nathan > > On Thu, Jul 10, 2014 at 06:54:19AM -0700, Ralph Castain wrote: > > IIRC, I thought I saw a change to that makefile.am flow thru yesterday? > > Could be there was an error in it > > On Jul 10, 2014, at 5:26 AM, Jeff Squyres (jsquyres) <jsquy...@cisco.com> > > wrote: > > > > Shouldn't be - PMI should be linking against the internal hwloc. > > I'm AFK and can't look at this. Have a look at other components that > > use > > hwloc and copy their header file setup and make file.am setup. > > > > Sent from my phone. No type good. > > On Jul 10, 2014, at 8:22 AM, "Mike Dubman" <mi...@dev.mellanox.co.il> > > wrote: > > > > Hi guys, > > jenkins node failing on this. > > is hwloc-devel now required to be available as part of distro? > > Thanks > > M > > > > 15:14:11 make[3]: Leaving directory > > `/scrap/jenkins/scrap/workspace/hpc-ompi-shmem/label/hpc-test-node/opal' > > 15:14:11 make[2]: Leaving directory > > `/scrap/jenkins/scrap/workspace/hpc-ompi-shmem/label/hpc-test-node/opal' > > 15:14:11 Making install in mca/common/pmi > > 15:14:11 make[2]: Entering directory > > `/scrap/jenkins/scrap/workspace/hpc-ompi-shmem/label/hpc-test-node/opal/mca/common/pmi' > > 15:14:11 CC common_pmi.lo > > 15:14:11 CCLD libmca_common_pmi.la > > 15:14:11 /usr/bin/ld: cannot find -lhwloc > > 15:14:11 collect2: ld returned 1 exit status > > 15:14:11 make[2]: *** [libmca_common_pmi.la] Error 1 > > 15:14:11 make[2]: Leaving directory > > `/scrap/jenkins/scrap/workspace/hpc-ompi-shmem/label/hpc-test-node/opal/mca/common/pmi' > > > > _______________________________________________ > > devel mailing list > > de...@open-mpi.org > > Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/devel > > Link to this post: > > http://www.open-mpi.org/community/lists/devel/2014/07/15090.php > > > > _______________________________________________ > > devel mailing list > > de...@open-mpi.org > > Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/devel > > Link to this post: > > http://www.open-mpi.org/community/lists/devel/2014/07/15091.php > > > _______________________________________________ > > devel mailing list > > de...@open-mpi.org > > Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/devel > > Link to this post: > > http://www.open-mpi.org/community/lists/devel/2014/07/15096.php > > > _______________________________________________ > devel mailing list > de...@open-mpi.org > Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/devel > Link to this post: > http://www.open-mpi.org/community/lists/devel/2014/07/15099.php > > _______________________________________________ > devel mailing list > de...@open-mpi.org > Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/devel > Link to this post: > http://www.open-mpi.org/community/lists/devel/2014/07/15110.php
