This is now done:

    
https://github.com/open-mpi/ompi/commit/a422d893b8e63347deb71bbaaa14ca25ddb1f192


On Oct 3, 2014, at 6:48 PM, Paul Hargrove <phhargr...@lbl.gov> wrote:

> Jeff,
> 
> Using calloc() only subject to --with-valgrind sounds good to me.
> If I'd known such a option exists, I'd not have suggested the MCA param idea.
> 
> -Paul
> 
> On Fri, Oct 3, 2014 at 3:33 PM, Jeff Squyres (jsquyres) <jsquy...@cisco.com> 
> wrote:
> How about a compromise -- how about enabling calloc() when --with-valgrind is 
> specified on the command line?
> 
> I.e., don't tie it to debug builds, but to valgrind-enabled builds?
> 
> 
> On Oct 3, 2014, at 6:11 PM, Paul Hargrove <phhargr...@lbl.gov> wrote:
> 
> > I agree with George that zeroing memory only in the debug builds could hide 
> > bugs, and thus would want to see the debug and non-debug builds have the 
> > same behavior (both malloc or both calloc).  So, I also agree this looks 
> > initially like a hard choice.
> >
> > What about using malloc() in non-debug builds and having a MCA param 
> > control malloc-vs-calloc in a debug build (with malloc being the default)?  
> > The param name could be something with "valgrind" in it to allow it to 
> > control any other "paranoid code" that may be introduced just to silence 
> > valgrind warnings.
> >
> > -Paul
> >
> > On Fri, Oct 3, 2014 at 3:02 PM, George Bosilca <bosi...@icl.utk.edu> wrote:
> > It’s a tough call. This proposal will create significant differences 
> > between the debug and fast builds. As the entire objects will be set to 
> > zero this might reduce bugs in the debug build, bugs that will be horribly 
> > difficult to track in any non-debug builds. Moreover, if the structures are 
> > carefully accessed in our code, adding such a disruptive initialization 
> > just to prevent valgrind from reporting false-positive about uninitialized 
> > reads in memcpy is too costly as a solution (I am also conscient that it 
> > will be almost impossible to write a valgrind suppression rule for the 
> > specific case you mention).
> >
> > Some parts of the code have (or at least had) some level of cleanness for 
> > the gaps in the structures. The solution was to minimally zero-fy the gaps, 
> > maintaining the same behavior between debug and non-debug builds. However, 
> > in order to do this one need to know the layout of the structure, so this 
> > is not a completely generic solution…
> >
> >   George.
> >
> >
> > On Oct 3, 2014, at 16:54 , Jeff Squyres (jsquyres) <jsquy...@cisco.com> 
> > wrote:
> >
> > > WHAT: change the malloc() to calloc() in opal_obj_new() (perhaps only in 
> > > debug builds?)
> > >
> > > WHY: Drastically reduces valgrind output
> > >
> > > WHERE: see 
> > > https://github.com/open-mpi/ompi/blob/master/opal/class/opal_object.h#L462-L467
> > >
> > > TIMEOUT: teleconf, Tue, Oct 14 (there's no rush)
> > >
> > > MORE DETAIL:
> > >
> > > I was debugging some code today and came across a bunch of places where 
> > > we write structs down various IPC mechanisms, and the structs contain 
> > > holes.  In most places, the performance doesn't matter / the readability 
> > > of struct members is more important, so we haven't re-ordered the structs 
> > > to remove holes.  But consequently, those holes end up uninitialized, and 
> > > therefore memcpy()ing or write()ing instances of these structs causes 
> > > valgrind to emit warnings.
> > >
> > > The patch below eliminates most (all?) of these valgrind warnings -- in 
> > > debug builds, it changes the malloc() inside OBJ_NEW to a calloc().
> > >
> > > Upon a little more thought, however, I wonder if we use OBJ_NEW in any 
> > > fast code paths (other than in bulk, such as when we need to grow a free 
> > > list).  Specifically: would it be terrible to *always* calloc -- not just 
> > > for debug builds?
> > >
> > > -----
> > > diff --git a/opal/class/opal_object.h b/opal/class/opal_object.h
> > > index 7012bac..585f13e 100644
> > > --- a/opal/class/opal_object.h
> > > +++ b/opal/class/opal_object.h
> > > @@ -464,7 +464,11 @@ static inline opal_object_t 
> > > *opal_obj_new(opal_class_t * cl
> > >     opal_object_t *object;
> > >     assert(cls->cls_sizeof >= sizeof(opal_object_t));
> > >
> > > +#if OPAL_ENABLE_DEBUG
> > > +    object = (opal_object_t *) calloc(1, cls->cls_sizeof);
> > > +#else
> > >     object = (opal_object_t *) malloc(cls->cls_sizeof);
> > > +#endif
> > >     if (0 == cls->cls_initialized) {
> > >         opal_class_initialize(cls);
> > >     }
> > > -----
> > >
> > > --
> > > Jeff Squyres
> > > jsquy...@cisco.com
> > > For corporate legal information go to: 
> > > http://www.cisco.com/web/about/doing_business/legal/cri/
> > >
> > > _______________________________________________
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> > > http://www.open-mpi.org/community/lists/devel/2014/10/16001.php
> >
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> >
> >
> >
> > --
> > Paul H. Hargrove                          phhargr...@lbl.gov
> > Future Technologies Group
> > Computer and Data Sciences Department     Tel: +1-510-495-2352
> > Lawrence Berkeley National Laboratory     Fax: +1-510-486-6900
> > _______________________________________________
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> 
> 
> --
> Jeff Squyres
> jsquy...@cisco.com
> For corporate legal information go to: 
> http://www.cisco.com/web/about/doing_business/legal/cri/
> 
> _______________________________________________
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> http://www.open-mpi.org/community/lists/devel/2014/10/16006.php
> 
> 
> 
> -- 
> Paul H. Hargrove                          phhargr...@lbl.gov
> Future Technologies Group
> Computer and Data Sciences Department     Tel: +1-510-495-2352
> Lawrence Berkeley National Laboratory     Fax: +1-510-486-6900
> _______________________________________________
> devel mailing list
> de...@open-mpi.org
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> Link to this post: 
> http://www.open-mpi.org/community/lists/devel/2014/10/16008.php


-- 
Jeff Squyres
jsquy...@cisco.com
For corporate legal information go to: 
http://www.cisco.com/web/about/doing_business/legal/cri/

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