Aha! Thanks - just what the doctor ordered!

> On Sep 23, 2015, at 5:45 PM, Gilles Gouaillardet <gil...@rist.or.jp> wrote:
> 
> Ralph,
> 
> the root cause is
> getsockopt(..., SOL_SOCKET, SO_RCVTIMEO,...)
> fails with errno ENOPROTOOPT on solaris 11.2
> 
> the attached patch is a proof of concept and works for me :
> /* if ENOPROTOOPT, do not try to set and restore SO_RCVTIMEO */
> 
> Cheers,
> 
> Gilles
> 
> On 9/21/2015 2:16 PM, Paul Hargrove wrote:
>> Ralph,
>> 
>> Just as you say:
>> The first 64s pause was before the hwloc error message appeared.
>> The second was after the second server_setup_fork appears, and before 
>> whatever line came after that.
>> 
>> I don't know if stdio buffering my be "distorting" the placement of the 
>> pause relative to the lines of output.
>> However, prior to your patch the entire failed mpirun was around 1s.
>> 
>> No allocation.
>> No resource manager.
>> Just a single workstation.
>> 
>> -Paul
>> 
>> On Sun, Sep 20, 2015 at 9:32 PM, Ralph Castain <r...@open-mpi.org 
>> <mailto:r...@open-mpi.org>> wrote:
>> ?? Just so this old fossilized brain gets this right: you are saying there 
>> was a 64s pause before the hwloc error appeared, and then another 64s pause 
>> after the second server_setup_fork message appeared?
>> 
>> If that’s true, then I’m chasing the wrong problem - it sounds like 
>> something is messed up in the mpirun startup. Did you have more than one 
>> node in the allocation by chance? I’m wondering if we are getting held up by 
>> something in the daemon launch/callback area.
>> 
>> 
>> 
>>> On Sep 20, 2015, at 4:08 PM, Paul Hargrove <phhargr...@lbl.gov 
>>> <mailto:phhargr...@lbl.gov>> wrote:
>>> 
>>> Ralph,
>>> 
>>> Still failing with that patch, but with the addition of a fairly long pause 
>>> (64s) before the first error message appears, and again after the second 
>>> "server setup_fork" (64s again)
>>> 
>>> New output is attached.
>>> 
>>> -Paul
>>> 
>>> On Sun, Sep 20, 2015 at 2:15 PM, Ralph Castain <r...@open-mpi.org 
>>> <mailto:r...@open-mpi.org>> wrote:
>>> Argh - found a typo in the output line. Could you please try the attached 
>>> patch and do it again? This might fix it, but if not it will provide me 
>>> with some idea of the returned error.
>>> 
>>> Thanks
>>> Ralph
>>> 
>>> 
>>>> On Sep 20, 2015, at 12:40 PM, Paul Hargrove < 
>>>> <mailto:phhargr...@lbl.gov>phhargr...@lbl.gov <mailto:phhargr...@lbl.gov>> 
>>>> wrote:
>>>> 
>>>> Yes, it is definitely at 10.
>>>> Another attempt is attached.
>>>> -Paul
>>>> 
>>>> On Sun, Sep 20, 2015 at 8:19 AM, Ralph Castain < 
>>>> <mailto:r...@open-mpi.org>r...@open-mpi.org <mailto:r...@open-mpi.org>> 
>>>> wrote:
>>>> Paul - can you please confirm that you gave mpirun a level of 10 for the 
>>>> pmix_base_verbose param? This output isn’t what I would have expected from 
>>>> that level - it looks more like the verbosity was set to 5, and so the 
>>>> error number isn’t printed.
>>>> 
>>>> Thanks
>>>> Ralph
>>>> 
>>>> 
>>>>> On Sep 20, 2015, at 3:42 AM, Gilles Gouaillardet < 
>>>>> <mailto:gilles.gouaillar...@gmail.com>gilles.gouaillar...@gmail.com 
>>>>> <mailto:gilles.gouaillar...@gmail.com>> wrote:
>>>>> 
>>>>> Paul,
>>>>> 
>>>>> I do not remember it like that ...
>>>>> 
>>>>> at that time, the issue in ompi was that the global errno was uses 
>>>>> instead of the per thread errno.
>>>>> though the man pages tells -mt should be used fir multithreaded apps, you 
>>>>> tried -D_REENTRANT on all your platforms, and it was enough to get the 
>>>>> expected result.
>>>>> 
>>>>> I just wanted to check pmix1xx (sub)configure did correctly pass the 
>>>>> -D_REENTRANT flag, and it does. so this is very likely a new and 
>>>>> unrelated error
>>>>> 
>>>>> Cheers,
>>>>> 
>>>>> Gilles
>>>>> 
>>>>> On Sunday, September 20, 2015, Paul Hargrove < 
>>>>> <mailto:phhargr...@lbl.gov>phhargr...@lbl.gov 
>>>>> <mailto:phhargr...@lbl.gov>> wrote:
>>>>> Gilles,
>>>>> 
>>>>> Yes every $CC invocation in opal/mca/pmix/pmix1xx includes "-D_REENTRANT".
>>>>> However, they don't include "-mt".
>>>>> I believe we concluded (when we had problems previously) that "-mt" was 
>>>>> the proper flag (at compile and link) for multi-threaded with the Studio 
>>>>> compilers.
>>>>> 
>>>>> -Paul
>>>>> 
>>>>> On Sat, Sep 19, 2015 at 11:29 PM, Gilles Gouaillardet < 
>>>>> <>gilles.gouaillar...@gmail.com <mailto:gilles.gouaillar...@gmail.com>> 
>>>>> wrote:
>>>>> Paul,
>>>>> 
>>>>> Can you please double check pmix1xx is compiled with -D_REENTRANT ?
>>>>> We ran into similar issues in the past, and they only occurred with 
>>>>> Solaris 
>>>>> 
>>>>> Cheers,
>>>>> 
>>>>> Gilles
>>>>> 
>>>>> 
>>>>> On Sunday, September 20, 2015, Paul Hargrove < <>phhargr...@lbl.gov 
>>>>> <mailto:phhargr...@lbl.gov>> wrote:
>>>>> Ralph,
>>>>> The output from the requested run is attached.
>>>>> -Paul
>>>>> 
>>>>> On Sat, Sep 19, 2015 at 9:46 PM, Ralph Castain < <>r...@open-mpi.org 
>>>>> <mailto:r...@open-mpi.org>> wrote:
>>>>> Ah, okay - that makes more sense. I’ll have to let Brice see if he can 
>>>>> figure out how to silence the hwloc error message as I can’t find where 
>>>>> it came from. The other errors are real and are the reason why the job 
>>>>> was terminated.
>>>>> 
>>>>> The problem is that we are trying to establish a communication between 
>>>>> the app and the daemon via unix domain socket, and we failed to do so. 
>>>>> The error tells me that we were able to create and connect to the socket, 
>>>>> but failed when the daemon tried to do a blocking send to the app.
>>>>> 
>>>>> Can you rerun it with -mca pmix_base_verbose 10? It will tell us the 
>>>>> value of the error number that was returned
>>>>> 
>>>>> Thanks
>>>>> Ralph
>>>>> 
>>>>> 
>>>>>> On Sep 19, 2015, at 9:37 PM, Paul Hargrove < <>phhargr...@lbl.gov 
>>>>>> <mailto:phhargr...@lbl.gov>> wrote:
>>>>>> 
>>>>>> Ralph,
>>>>>> 
>>>>>> No it did not run.
>>>>>> The complete output (which I really should have included in the first 
>>>>>> place) is below.
>>>>>> 
>>>>>> -Paul
>>>>>> 
>>>>>> $ mpirun -mca btl sm,self -np 2 examples/ring_c'
>>>>>> Error opening /devices/pci@0,0:reg: Permission denied
>>>>>> [pcp-d-3:26054] PMIX ERROR: ERROR in file 
>>>>>> /export/home/phargrov/OMPI/openmpi-master-solaris11-x64-ss12u3/openmpi-dev-2559-g567c9e3/opal/mca/pmix/pmix1xx/pmix/src/client/pmix_client.c
>>>>>>  at line 181
>>>>>> [pcp-d-3:26053] PMIX ERROR: UNREACHABLE in file 
>>>>>> /export/home/phargrov/OMPI/openmpi-master-solaris11-x64-ss12u3/openmpi-dev-2559-g567c9e3/opal/mca/pmix/pmix1xx/pmix/src/server/pmix_server_listener.c
>>>>>>  at line 463
>>>>>> --------------------------------------------------------------------------
>>>>>> It looks like MPI_INIT failed for some reason; your parallel process is
>>>>>> likely to abort.  There are many reasons that a parallel process can
>>>>>> fail during MPI_INIT; some of which are due to configuration or 
>>>>>> environment
>>>>>> problems.  This failure appears to be an internal failure; here's some
>>>>>> additional information (which may only be relevant to an Open MPI
>>>>>> developer):
>>>>>> 
>>>>>>   ompi_mpi_init: ompi_rte_init failed
>>>>>>   --> Returned "(null)" (-43) instead of "Success" (0)
>>>>>> --------------------------------------------------------------------------
>>>>>> *** An error occurred in MPI_Init
>>>>>> *** on a NULL communicator
>>>>>> *** MPI_ERRORS_ARE_FATAL (processes in this communicator will now abort,
>>>>>> ***    and potentially your MPI job)
>>>>>> [pcp-d-3:26054] Local abort before MPI_INIT completed completed 
>>>>>> successfully, but am not able to aggregate error messages, and not able 
>>>>>> to guarantee that all other processes were killed!
>>>>>> -------------------------------------------------------
>>>>>> Primary job  terminated normally, but 1 process returned
>>>>>> a non-zero exit code.. Per user-direction, the job has been aborted.
>>>>>> -------------------------------------------------------
>>>>>> --------------------------------------------------------------------------
>>>>>> mpirun detected that one or more processes exited with non-zero status, 
>>>>>> thus causing
>>>>>> the job to be terminated. The first process to do so was:
>>>>>> 
>>>>>>   Process name: [[11371,1],0]
>>>>>>   Exit code:    1
>>>>>> --------------------------------------------------------------------------
>>>>>> 
>>>>>> On Sat, Sep 19, 2015 at 8:50 PM, Ralph Castain < <>r...@open-mpi.org 
>>>>>> <mailto:r...@open-mpi.org>> wrote:
>>>>>> Paul, can you clarify something for me? The error in this case indicates 
>>>>>> that the client wasn’t able to reach the daemon - this should have 
>>>>>> resulted in termination of the job. Did the job actually run?
>>>>>> 
>>>>>> 
>>>>>>> On Sep 18, 2015, at 2:50 AM, Ralph Castain < <>r...@open-mpi.org 
>>>>>>> <mailto:r...@open-mpi.org>> wrote:
>>>>>>> 
>>>>>>> I'm on travel right now, but it should be an easy fix when I return. 
>>>>>>> Sorry for the annoyance
>>>>>>> 
>>>>>>> 
>>>>>>> On Thu, Sep 17, 2015 at 11:13 PM, Paul Hargrove < <>phhargr...@lbl.gov 
>>>>>>> <mailto:phhargr...@lbl.gov>> wrote:
>>>>>>> Any suggestion how I (as a non-root user) can avoid seeing this hwloc 
>>>>>>> error message on every run?
>>>>>>> 
>>>>>>> -Paul
>>>>>>> 
>>>>>>> On Thu, Sep 17, 2015 at 11:00 PM, Gilles Gouaillardet < 
>>>>>>> <>gil...@rist.or.jp <mailto:gil...@rist.or.jp>> wrote:
>>>>>>> Paul,
>>>>>>> 
>>>>>>> IIRC, the "Permission denied" is coming from hwloc that cannot collect 
>>>>>>> all the info it would like.
>>>>>>> 
>>>>>>> Cheers,
>>>>>>> 
>>>>>>> Gilles 
>>>>>>> 
>>>>>>> On 9/18/2015 2:34 PM, Paul Hargrove wrote:
>>>>>>>> Tried tonight's master tarball on Solaris 11.2 on x86-64 with the 
>>>>>>>> Studio Compilers  (default ILP32 output) and saw the following result
>>>>>>>> 
>>>>>>>> $ mpirun -mca btl sm,self -np 2 examples/ring_c'
>>>>>>>> Error opening /devices/pci@0,0:reg: Permission denied
>>>>>>>> [pcp-d-4:00492] PMIX ERROR: ERROR in file 
>>>>>>>> /export/home/phargrov/OMPI/openmpi-master-solaris11-x86-ss12u3/openmpi-dev-2559-g567c9e3/opal/mca/pmix/pmix1xx/pmix/src/client/pmix_client.c
>>>>>>>>  at line 181
>>>>>>>> [pcp-d-4:00491] PMIX ERROR: UNREACHABLE in file 
>>>>>>>> /export/home/phargrov/OMPI/openmpi-master-solaris11-x86-ss12u3/openmpi-dev-2559-g567c9e3/opal/mca/pmix/pmix1xx/pmix/src/server/pmix_server_listener.c
>>>>>>>>  at line 463
>>>>>>>> 
>>>>>>>> I don't know if the Permission denied error is related to the 
>>>>>>>> subsequent PMIX errors, but any message that says "UNREACHABLE" is 
>>>>>>>> clearly worth reporting.
>>>>>>>> 
>>>>>>>> -Paul
>>>>>>>> 
>>>>>>>> -- 
>>>>>>>> Paul H. Hargrove                           <>phhargr...@lbl.gov 
>>>>>>>> <mailto:phhargr...@lbl.gov>
>>>>>>>> Computer Languages & Systems Software (CLaSS) Group
>>>>>>>> Computer Science Department               Tel: +1-510-495-2352 
>>>>>>>> <tel:%2B1-510-495-2352>
>>>>>>>> Lawrence Berkeley National Laboratory     Fax: +1-510-486-6900 
>>>>>>>> <tel:%2B1-510-486-6900>
>>>>>>>> 
>>>>>>>> _______________________________________________
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>>>>>>> 
>>>>>>> 
>>>>>>> -- 
>>>>>>> Paul H. Hargrove                           <>phhargr...@lbl.gov 
>>>>>>> <mailto:phhargr...@lbl.gov>
>>>>>>> Computer Languages & Systems Software (CLaSS) Group
>>>>>>> Computer Science Department               Tel: +1-510-495-2352 
>>>>>>> <tel:%2B1-510-495-2352>
>>>>>>> Lawrence Berkeley National Laboratory     Fax: +1-510-486-6900 
>>>>>>> <tel:%2B1-510-486-6900>
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>>>>>> 
>>>>>> 
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>>>>>> 
>>>>>> 
>>>>>> 
>>>>>> -- 
>>>>>> Paul H. Hargrove                           <>phhargr...@lbl.gov 
>>>>>> <mailto:phhargr...@lbl.gov>
>>>>>> Computer Languages & Systems Software (CLaSS) Group
>>>>>> Computer Science Department               Tel: +1-510-495-2352 
>>>>>> <tel:%2B1-510-495-2352>
>>>>>> Lawrence Berkeley National Laboratory     Fax: +1-510-486-6900 
>>>>>> <tel:%2B1-510-486-6900>_______________________________________________
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>>>>> 
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>>>>> 
>>>>> -- 
>>>>> Paul H. Hargrove                           <>phhargr...@lbl.gov 
>>>>> <mailto:phhargr...@lbl.gov>
>>>>> Computer Languages & Systems Software (CLaSS) Group
>>>>> Computer Science Department               Tel: +1-510-495-2352 
>>>>> <tel:%2B1-510-495-2352>
>>>>> Lawrence Berkeley National Laboratory     Fax: +1-510-486-6900 
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>>>>> 
>>>>> 
>>>>> -- 
>>>>> Paul H. Hargrove                           <>phhargr...@lbl.gov 
>>>>> <mailto:phhargr...@lbl.gov>
>>>>> Computer Languages & Systems Software (CLaSS) Group
>>>>> Computer Science Department               Tel: +1-510-495-2352 
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>>>>> Lawrence Berkeley National Laboratory     Fax: +1-510-486-6900 
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>>>> 
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>>>> 
>>>> 
>>>> -- 
>>>> Paul H. Hargrove                           
>>>> <mailto:phhargr...@lbl.gov>phhargr...@lbl.gov <mailto:phhargr...@lbl.gov>
>>>> Computer Languages & Systems Software (CLaSS) Group
>>>> Computer Science Department               Tel: +1-510-495-2352 
>>>> <tel:%2B1-510-495-2352>
>>>> Lawrence Berkeley National Laboratory     Fax: +1-510-486-6900 
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>>> -- 
>>> Paul H. Hargrove                           
>>> <mailto:phhargr...@lbl.gov>phhargr...@lbl.gov <mailto:phhargr...@lbl.gov>
>>> Computer Languages & Systems Software (CLaSS) Group
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>> -- 
>> Paul H. Hargrove                           
>> <mailto:phhargr...@lbl.gov>phhargr...@lbl.gov <mailto:phhargr...@lbl.gov>
>> Computer Languages & Systems Software (CLaSS) Group
>> Computer Science Department               Tel: +1-510-495-2352
>> Lawrence Berkeley National Laboratory     Fax: +1-510-486-6900
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