Hi Lisandro, Thanks for giving the rc3 a try. Could you post the output of ompi_info from your install to the list?
Thanks, Howard 2016-06-16 7:55 GMT-06:00 Lisandro Dalcin <dalc...@gmail.com>: > ./configure --prefix=/home/devel/mpi/openmpi/2.0.0rc3 --enable-debug > --enable-mem-debug > > https://bitbucket.org/mpi4py/mpi4py/src/master/demo/helloworld.c > > $ mpicc helloworld.c > > $ mpiexec -n 1 ./a.out > Hello, World! I am process 0 of 1 on kw14821. > > $ ./a.out > [kw14821:31370] *** Process received signal *** > [kw14821:31370] Signal: Segmentation fault (11) > [kw14821:31370] Signal code: Address not mapped (1) > [kw14821:31370] Failing at address: 0xf8 > [kw14821:31370] [ 0] /lib64/libpthread.so.0(+0x10a00)[0x7fc816196a00] > [kw14821:31370] [ 1] > > /home/devel/mpi/openmpi/2.0.0rc3/lib/libopen-pal.so.20(opal_libevent2022_event_priority_set+0xcb)[0x7fc81584c7db] > [kw14821:31370] [ 2] > > /home/devel/mpi/openmpi/2.0.0rc3/lib/openmpi/mca_rml_oob.so(orte_rml_oob_recv_buffer_nb+0x154)[0x7fc81277f95f] > [kw14821:31370] [ 3] > > /home/devel/mpi/openmpi/2.0.0rc3/lib/openmpi/mca_grpcomm_direct.so(+0x17c2)[0x7fc81469f7c2] > [kw14821:31370] [ 4] > > /home/devel/mpi/openmpi/2.0.0rc3/lib/libopen-rte.so.20(orte_grpcomm_base_select+0x17b)[0x7fc815b522e9] > [kw14821:31370] [ 5] > > /home/devel/mpi/openmpi/2.0.0rc3/lib/libopen-rte.so.20(orte_ess_base_app_setup+0x985)[0x7fc815b4cafe] > [kw14821:31370] [ 6] > > /home/devel/mpi/openmpi/2.0.0rc3/lib/openmpi/mca_ess_singleton.so(+0x37e2)[0x7fc81429c7e2] > [kw14821:31370] [ 7] > > /home/devel/mpi/openmpi/2.0.0rc3/lib/libopen-rte.so.20(orte_init+0x2d2)[0x7fc815b05b27] > [kw14821:31370] [ 8] > > /home/devel/mpi/openmpi/2.0.0rc3/lib/libmpi.so.20(ompi_mpi_init+0x31b)[0x7fc8163fbecf] > [kw14821:31370] [ 9] > > /home/devel/mpi/openmpi/2.0.0rc3/lib/libmpi.so.20(PMPI_Init_thread+0x7f)[0x7fc81642feae] > [kw14821:31370] [10] ./a.out[0x4008f3] > [kw14821:31370] [11] > /lib64/libc.so.6(__libc_start_main+0xf0)[0x7fc815de5580] > [kw14821:31370] [12] ./a.out[0x4007e9] > [kw14821:31370] *** End of error message *** > Segmentation fault (core dumped) > > > $ valgrind -q ./a.out > ==31396== Conditional jump or move depends on uninitialised value(s) > ==31396== at 0x5A9D4CA: opal_value_unload (dss_load_unload.c:291) > ==31396== by 0x74B6378: rte_init (ess_singleton_module.c:260) > ==31396== by 0x57A2B26: orte_init (orte_init.c:226) > ==31396== by 0x4E8CECE: ompi_mpi_init (ompi_mpi_init.c:501) > ==31396== by 0x4EC0EAD: PMPI_Init_thread (pinit_thread.c:69) > ==31396== by 0x4008F2: main (in > /home/dalcinl/Devel/mpi4py-dev/demo/a.out) > ==31396== > ==31396== Invalid read of size 4 > ==31396== at 0x5AEE7DB: opal_libevent2022_event_priority_set > (event.c:1859) > ==31396== by 0x8FD195E: orte_rml_oob_recv_buffer_nb (rml_oob_recv.c:74) > ==31396== by 0x70AE7C1: init (grpcomm_direct.c:78) > ==31396== by 0x57EF2E8: orte_grpcomm_base_select > (grpcomm_base_select.c:87) > ==31396== by 0x57E9AFD: orte_ess_base_app_setup (ess_base_std_app.c:223) > ==31396== by 0x74B67E1: rte_init (ess_singleton_module.c:323) > ==31396== by 0x57A2B26: orte_init (orte_init.c:226) > ==31396== by 0x4E8CECE: ompi_mpi_init (ompi_mpi_init.c:501) > ==31396== by 0x4EC0EAD: PMPI_Init_thread (pinit_thread.c:69) > ==31396== by 0x4008F2: main (in > /home/dalcinl/Devel/mpi4py-dev/demo/a.out) > ==31396== Address 0xf8 is not stack'd, malloc'd or (recently) free'd > ==31396== > [kw14821:31396] *** Process received signal *** > [kw14821:31396] Signal: Segmentation fault (11) > [kw14821:31396] Signal code: Address not mapped (1) > [kw14821:31396] Failing at address: 0xf8 > [kw14821:31396] [ 0] /lib64/libpthread.so.0(+0x10a00)[0x51bea00] > [kw14821:31396] [ 1] > > /home/devel/mpi/openmpi/2.0.0rc3/lib/libopen-pal.so.20(opal_libevent2022_event_priority_set+0xcb)[0x5aee7db] > [kw14821:31396] [ 2] > > /home/devel/mpi/openmpi/2.0.0rc3/lib/openmpi/mca_rml_oob.so(orte_rml_oob_recv_buffer_nb+0x154)[0x8fd195f] > [kw14821:31396] [ 3] > > /home/devel/mpi/openmpi/2.0.0rc3/lib/openmpi/mca_grpcomm_direct.so(+0x17c2)[0x70ae7c2] > [kw14821:31396] [ 4] > > /home/devel/mpi/openmpi/2.0.0rc3/lib/libopen-rte.so.20(orte_grpcomm_base_select+0x17b)[0x57ef2e9] > [kw14821:31396] [ 5] > > /home/devel/mpi/openmpi/2.0.0rc3/lib/libopen-rte.so.20(orte_ess_base_app_setup+0x985)[0x57e9afe] > [kw14821:31396] [ 6] > > /home/devel/mpi/openmpi/2.0.0rc3/lib/openmpi/mca_ess_singleton.so(+0x37e2)[0x74b67e2] > [kw14821:31396] [ 7] > > /home/devel/mpi/openmpi/2.0.0rc3/lib/libopen-rte.so.20(orte_init+0x2d2)[0x57a2b27] > [kw14821:31396] [ 8] > > /home/devel/mpi/openmpi/2.0.0rc3/lib/libmpi.so.20(ompi_mpi_init+0x31b)[0x4e8cecf] > [kw14821:31396] [ 9] > > /home/devel/mpi/openmpi/2.0.0rc3/lib/libmpi.so.20(PMPI_Init_thread+0x7f)[0x4ec0eae] > [kw14821:31396] [10] ./a.out[0x4008f3] > [kw14821:31396] [11] /lib64/libc.so.6(__libc_start_main+0xf0)[0x53ec580] > [kw14821:31396] [12] ./a.out[0x4007e9] > [kw14821:31396] *** End of error message *** > ==31396== > ==31396== Process terminating with default action of signal 11 (SIGSEGV) > ==31396== Access not within mapped region at address 0xF8 > ==31396== at 0x5AEE7DB: opal_libevent2022_event_priority_set > (event.c:1859) > ==31396== by 0x8FD195E: orte_rml_oob_recv_buffer_nb (rml_oob_recv.c:74) > ==31396== by 0x70AE7C1: init (grpcomm_direct.c:78) > ==31396== by 0x57EF2E8: orte_grpcomm_base_select > (grpcomm_base_select.c:87) > ==31396== by 0x57E9AFD: orte_ess_base_app_setup (ess_base_std_app.c:223) > ==31396== by 0x74B67E1: rte_init (ess_singleton_module.c:323) > ==31396== by 0x57A2B26: orte_init (orte_init.c:226) > ==31396== by 0x4E8CECE: ompi_mpi_init (ompi_mpi_init.c:501) > ==31396== by 0x4EC0EAD: PMPI_Init_thread (pinit_thread.c:69) > ==31396== by 0x4008F2: main (in > /home/dalcinl/Devel/mpi4py-dev/demo/a.out) > ==31396== If you believe this happened as a result of a stack > ==31396== overflow in your program's main thread (unlikely but > ==31396== possible), you can try to increase the size of the > ==31396== main thread stack using the --main-stacksize= flag. > ==31396== The main thread stack size used in this run was 8720384. > Killed > > -- > Lisandro Dalcin > ============ > Research Scientist > Computer, Electrical and Mathematical Sciences & Engineering (CEMSE) > Extreme Computing Research Center (ECRC) > King Abdullah University of Science and Technology (KAUST) > http://ecrc.kaust.edu.sa/ > > 4700 King Abdullah University of Science and Technology > al-Khawarizmi Bldg (Bldg 1), Office # 0109 > Thuwal 23955-6900, Kingdom of Saudi Arabia > http://www.kaust.edu.sa > > Office Phone: +966 12 808-0459 > _______________________________________________ > devel mailing list > de...@open-mpi.org > Subscription: https://www.open-mpi.org/mailman/listinfo.cgi/devel > Link to this post: > http://www.open-mpi.org/community/lists/devel/2016/06/19116.php >
