Hello list,
I just upgraded openmpi from 4.0.3 to 4.1.0 to see if it would solve a
weird openpmix problem we've been having; I configured it using:
./configure --prefix=/usr/local --with-pmix=internal --with-slurm
--without-tm --without-moab --without-singularity --without-fca
--without-hcoll --without-ime --without-lustre --without-psm
--without-psm2 --without-mxm --with-gnu-ld
(I also have an external pmix version installed and tried using that
instead of internal, but it doesn't change anything). Here's the output
of configure:
Open MPI configuration:
-----------------------
Version: 4.1.0
Build MPI C bindings: yes
Build MPI C++ bindings (deprecated): no
Build MPI Fortran bindings: mpif.h, use mpi, use mpi_f08
MPI Build Java bindings (experimental): no
Build Open SHMEM support: false (no spml)
Debug build: no
Platform file: (none)
Miscellaneous
-----------------------
CUDA support: no
HWLOC support: external
Libevent support: external
PMIx support: Internal
Transports
-----------------------
Cisco usNIC: no
Cray uGNI (Gemini/Aries): no
Intel Omnipath (PSM2): no
Intel TrueScale (PSM): no
Mellanox MXM: no
Open UCX: no
OpenFabrics OFI Libfabric: no
OpenFabrics Verbs: no
Portals4: no
Shared memory/copy in+copy out: yes
Shared memory/Linux CMA: yes
Shared memory/Linux KNEM: no
Shared memory/XPMEM: no
TCP: yes
Resource Managers
-----------------------
Cray Alps: no
Grid Engine: no
LSF: no
Moab: no
Slurm: yes
ssh/rsh: yes
Torque: no
OMPIO File Systems
-----------------------
DDN Infinite Memory Engine: no
Generic Unix FS: yes
IBM Spectrum Scale/GPFS: no
Lustre: no
PVFS2/OrangeFS: no
Once configured, make and sudo make install worked without a glitch; but
when I run mpirun, I get this:
andrej@terra:~/system/openmpi-4.1.0$ mpirun --version
mpirun (Open MPI) 4.1.0
Report bugs to http://www.open-mpi.org/community/help/
andrej@terra:~/system/openmpi-4.1.0$ mpirun
malloc(): corrupted top size
Aborted (core dumped)
No matter what I try to run, it always segfaults. Any suggestions on
what I can try to resolve this?
Oh, I should also mention that I tried to remove the global libevent;
openmpi configured its internal copy but then failed to build.
Thanks,
Andrej
