But I assume you ran all the Sql update scripts? On 8 Dec 2015 07:02, "Knut Staring" <knu...@gmail.com> wrote:
> ---------- Forwarded message ---------- > From: "Neeraj Gupta" <neeraj.h...@gmail.com> > Date: 8 Dec 2015 06:54 > Subject: Re: [Dhis2-devs] Exception with Mysql database in version 2.21 > To: "Knut Staring" <knu...@gmail.com> > Cc: > > Thanks for replying Knut. > > We upgraded directly from 2.16 to 2.21. But the errors seems more database > related > > For example if we see drop _orgunitstructure query, it should be dropped > irrespective of versions. > > On Mon, Dec 7, 2015 at 6:24 PM, Knut Staring <knu...@gmail.com> wrote: > >> You upgraded directly? Or step by step (2.17, 2.18...) >> >> On Mon, Dec 7, 2015 at 1:52 PM, Neeraj Gupta <neeraj.h...@gmail.com> >> wrote: >> >>> Dear All, >>> >>> We recently upgraded DHIS 2.16 to 2.21 where database is Mysql some of >>> the errors are listed below, can someone please guide us?*(We are using >>> aggregated data not tracker)* >>> >>> Error1: >>> In mysql *programrule *table is not created automatically. While >>> starting getting the below error: >>> >>> >>> * ERROR 2015-12-07 17:36:56,864 Problem updating: programrule, id >>> column: programruleid (IdentityPopulator.java [localho >>> st-startStop-1]) >>> org.springframework.jdbc.BadSqlGrammarException: StatementCallback; bad >>> SQL grammar [SELECT * from programrule WHERE uid >>> IS NULL]; nested exception is >>> com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: Table >>> 'dhis.programrule' >>> doesn't exist >>> at >>> org.springframework.jdbc.support.SQLErrorCodeSQLExceptionTranslator.doTranslate(SQLErrorCodeSQLExceptionTrans >>> lator.java:231) >>> at >>> org.springframework.jdbc.support.AbstractFallbackSQLExceptionTranslator.translate(AbstractFallbackSQLExceptio >>> nTranslator.java:73) >>> at >>> org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:416) >>> at >>> org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:471) >>> at >>> org.springframework.jdbc.core.JdbcTemplate.queryForRowSet(JdbcTemplate.java:526) >>> at >>> org.hisp.dhis.common.IdentityPopulator.execute(IdentityPopulator.java:86) >>> at >>> org.hisp.dhis.system.startup.DefaultStartupRoutineExecutor.execute(DefaultStartupRoutineExecutor.java:117) >>> at >>> org.hisp.dhis.system.startup.DefaultStartupRoutineExecutor.execute(DefaultStartupRoutineExecutor.java:86) >>> at >>> org.hisp.dhis.system.startup.StartupListener.contextInitialized(StartupListener.java:71) >>> at >>> org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4729) >>> at >>> org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5167) >>> at >>> org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150) >>> at >>> org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:725) >>> at >>> org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:701) >>> at >>> org.apache.catalina.core.StandardHost.addChild(StandardHost.java:717) >>> at >>> org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:945) >>> at >>> org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1768) >>> at java.util.concurrent.Executors$RunnableAdapter.call(Unknown >>> Source) >>> at java.util.concurrent.FutureTask.run(Unknown Source) >>> at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown >>> Source) >>> at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown >>> Source) >>> at java.lang.Thread.run(Unknown Source) >>> Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: >>> Table 'dhis.programrule' doesn't exist >>> at >>> sun.reflect.GeneratedConstructorAccessor53.newInstance(Unknown Source) >>> at >>> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source) >>> at java.lang.reflect.Constructor.newInstance(Unknown Source) >>> at com.mysql.jdbc.Util.handleNewInstance(Util.java:377) >>> at com.mysql.jdbc.Util.getInstance(Util.java:360) >>> at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:978) >>> at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3887) >>> at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3823) >>> at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:2435) >>> at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2582) >>> at >>> com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2526) >>> at >>> com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2484) >>> at >>> com.mysql.jdbc.StatementImpl.executeQuery(StatementImpl.java:1446) >>> at >>> com.mchange.v2.c3p0.impl.NewProxyStatement.executeQuery(NewProxyStatement.java:35) >>> at >>> org.springframework.jdbc.core.JdbcTemplate$1QueryStatementCallback.doInStatement(JdbcTemplate.java:455) >>> at >>> org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:405) >>> ... 19 more >>> * INFO 2015-12-07 17:36:57,144 Executing startup routine [6 of 13, >>> runlevel 5]: TableCreator (DefaultStartupRoutineExec >>> utor.java [localhost-startStop-1]) >>> >>> >>> ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ >>> >>> ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ >>> >>> Error2: While generating resource tables got the below error, think the >>> query should be *DROP TABLE IF EXISTS _orgunitstructure; Same applies >>> for all resource tables.* >>> >>> * INFO 2015-12-07 17:41:06,417 [Level: INFO, category: >>> RESOURCETABLE_UPDATE, time: Mon Dec 07 17:41:06 IST 2015, messag >>> e: Generating resource tables] (InMemoryNotifier.java [taskScheduler-1]) >>> * INFO 2015-12-07 17:41:06,465 Create table SQL: create table >>> _orgunitstructure_temp (organisationunitid integer not nu >>> ll primary key, organisationunituid character(11), level integer, >>> `idlevel1` integer, `uidlevel1` character(11), `idleve >>> l2` integer, `uidlevel2` character(11), `idlevel3` integer, `uidlevel3` >>> character(11)); (JdbcResourceTableStore.java [ta >>> skScheduler-1]) >>> * INFO 2015-12-07 17:41:06,495 Populate table content rows: 203 >>> (JdbcResourceTableStore.java [taskScheduler-1]) >>> * INFO 2015-12-07 17:41:06,546 Create index SQL: create unique index >>> in_orgunitstructure_organisationunituid_VWU2G on _ >>> orgunitstructure_temp(organisationunituid) (JdbcResourceTableStore.java >>> [taskScheduler-1]) >>> * INFO 2015-12-07 17:41:06,582 [Level: ERROR, category: >>> RESOURCETABLE_UPDATE, time: Mon Dec 07 17:41:06 IST 2015, messa >>> ge: Process failed: StatementCallback; bad SQL grammar [drop table >>> _orgunitstructure;]; nested exception is com.mysql.jd >>> bc.exceptions.jdbc4.MySQLSyntaxErrorException: Unknown table >>> 'dhis._orgunitstructure'] (InMemoryNotifier.java [tas >>> kScheduler-1]) >>> >>> >>> ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ >>> >>> ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ >>> >>> Error3: Tried to copy resource table structures from old db and tried >>> generate resource table option, this time got the below error: >>> >>> * INFO 2015-12-07 18:05:19,296 [Level: ERROR, category: >>> RESOURCETABLE_UPDATE, time: Mon Dec 07 18:05:19 IST 2015, messa >>> ge: Process failed: StatementCallback; bad SQL grammar [create unique >>> index in_dataelementstructure_dataelementuid_M86c6 >>> on _dataelementstructure_temp(dataelementuid);create index >>> in_dataelementstructure_datasetid_fVMFF on _dataelementstruc >>> ture_temp(datasetid);create index >>> in_dataelementstructure_datasetuid_nsdEu on >>> _dataelementstructure_temp(datasetuid);cre >>> ate index in_dataelementstructure_periodtypeid_EkjZg on >>> _dataelementstructure_temp(periodtypeid);]; nested exception is >>> com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: You have an >>> error in your SQL syntax; check the manual that c >>> orresponds to your MySQL server version for the right syntax to use near >>> 'create index in_dataelementstructure_datasetid >>> _fVMFF on _dataelementstructure_te' at line 1] (InMemoryNotifier.java >>> [taskScheduler-5]) >>> * ERROR 2015-12-07 18:05:19,319 Unexpected error occurred in scheduled >>> task. (TaskUtils.java [taskScheduler-5]) >>> org.springframework.jdbc.BadSqlGrammarException: StatementCallback; bad >>> SQL grammar [create unique index in_dataelements >>> tructure_dataelementuid_M86c6 on >>> _dataelementstructure_temp(dataelementuid);create index >>> in_dataelementstructure_dataset >>> id_fVMFF on _dataelementstructure_temp(datasetid);create index >>> in_dataelementstructure_datasetuid_nsdEu on _dataelements >>> tructure_temp(datasetuid);create index >>> in_dataelementstructure_periodtypeid_EkjZg on >>> _dataelementstructure_temp(periodty >>> peid);]; nested exception is >>> com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: You have an >>> error in your SQL sy >>> ntax; check the manual that corresponds to your MySQL server version for >>> the right syntax to use near 'create index in_d >>> ataelementstructure_datasetid_fVMFF on _dataelementstructure_te' at line >>> 1 >>> at >>> org.springframework.jdbc.support.SQLErrorCodeSQLExceptionTranslator.doTranslate(SQLErrorCodeSQLExceptionTrans >>> lator.java:231) >>> at >>> org.springframework.jdbc.support.AbstractFallbackSQLExceptionTranslator.translate(AbstractFallbackSQLExceptio >>> nTranslator.java:73) >>> at >>> org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:416) >>> at >>> org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:440) >>> at >>> org.hisp.dhis.resourcetable.jdbc.JdbcResourceTableStore.generateResourceTable(JdbcResourceTableStore.java:118 >>> ) >>> at >>> org.hisp.dhis.resourcetable.DefaultResourceTableService.generateDataElementTable(DefaultResourceTableService. >>> java:198) >>> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) >>> at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) >>> at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown >>> Source) >>> at java.lang.reflect.Method.invoke(Unknown Source) >>> at >>> org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:317) >>> at >>> org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java: >>> 190) >>> at >>> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157) >>> at >>> org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterce >>> ptor.java:99) >>> at >>> org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspec >>> tSupport.java:281) >>> at >>> org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96) >>> at >>> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179) >>> at >>> org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:207) >>> at com.sun.proxy.$Proxy143.generateDataElementTable(Unknown >>> Source) >>> at >>> org.hisp.dhis.resourcetable.scheduling.ResourceTableTask.generateAll(ResourceTableTask.java:121) >>> at >>> org.hisp.dhis.resourcetable.scheduling.ResourceTableTask.run(ResourceTableTask.java:84) >>> at >>> org.springframework.scheduling.support.DelegatingErrorHandlingRunnable.run(DelegatingErrorHandlingRunnable.ja >>> va:54) >>> at java.util.concurrent.Executors$RunnableAdapter.call(Unknown >>> Source) >>> at java.util.concurrent.FutureTask.run(Unknown Source) >>> at >>> java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$201(Unknown >>> Source) >>> at >>> java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown >>> Source) >>> at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown >>> Source) >>> at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown >>> Source) >>> at java.lang.Thread.run(Unknown Source) >>> Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: >>> You have an error in your SQL syntax; check the ma >>> nual that corresponds to your MySQL server version for the right syntax >>> to use near 'create index in_dataelementstructur >>> e_datasetid_fVMFF on _dataelementstructure_te' at line 1 >>> at >>> sun.reflect.GeneratedConstructorAccessor53.newInstance(Unknown Source) >>> at >>> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source) >>> at java.lang.reflect.Constructor.newInstance(Unknown Source) >>> at com.mysql.jdbc.Util.handleNewInstance(Util.java:377) >>> at com.mysql.jdbc.Util.getInstance(Util.java:360) >>> at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:978) >>> at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3887) >>> at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3823) >>> at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:2435) >>> at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2582) >>> at >>> com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2526) >>> at >>> com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2484) >>> at com.mysql.jdbc.StatementImpl.execute(StatementImpl.java:848) >>> at com.mysql.jdbc.StatementImpl.execute(StatementImpl.java:742) >>> at >>> com.mchange.v2.c3p0.impl.NewProxyStatement.execute(NewProxyStatement.java:1006) >>> at >>> org.springframework.jdbc.core.JdbcTemplate$1ExecuteStatementCallback.doInStatement(JdbcTemplate.java:432) >>> at >>> org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:405) >>> ... 26 more >>> >>> -- >>> Thanks, >>> Neeraj Gupta >>> >>> _______________________________________________ >>> Mailing list: https://launchpad.net/~dhis2-devs >>> Post to : dhis2-d...@lists.launchpad.net >>> Unsubscribe : https://launchpad.net/~dhis2-devs >>> More help : https://help.launchpad.net/ListHelp >>> >>> >> >> >> -- >> Knut Staring >> Dept. of Informatics, University of Oslo >> Norway: +4791880522 >> Skype: knutstar >> http://dhis2.org >> > > > > -- > Thanks, > Neeraj Gupta >
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